PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G066900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 200aa    MW: 21710.5 Da    PI: 6.1498
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G066900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.24.9e-10549148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +++W++eEd  l+  v+ +G ++W++I+        + +c++rw+++l
  Brast02G066900.1.p  5 KDSWSAEEDANLIAMVQNYGVEHWSLISTGCR---DARSCRLRWFNHL 49
                        679*************************9987...8999*******97 PP
2Myb_DNA-binding26.11.9e-085685232
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg 32
                         ++T eE+ l++da  ++G++ W+ Iar ++
  Brast02G066900.1.p 56 HPFTVEEHTLIADAQSLHGNK-WDDIARSLN 85
                        589******************.******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.114153IPR017930Myb domain
SuperFamilySSF466898.44E-19485IPR009057Homeodomain-like
SMARTSM007172.8E-7451IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-16761IPR009057Homeodomain-like
CDDcd001677.33E-10749No hitNo description
PfamPF139213.2E-9863No hitNo description
PROSITE profilePS500904.87950115IPR017877Myb-like domain
SMARTSM00717265491IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-56285IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAERKDSWSA EEDANLIAMV QNYGVEHWSL ISTGCRDARS CRLRWFNHLS PTVDRHPFTV  60
EEHTLIADAQ SLHGNKWDDI ARSLNSAAPI TPTTANPSAK PEPPPQRSPS TTSRRQPSGT  120
GGGGDDDAWL TLSLGLPQQP VHKQPLVHVA KQEPMLPMAT EPPIMAAMRE MVREEVELQA  180
AQLASSVFMA AFAGAAGRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-15584788B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G066900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230240.13e-48transcription factor MYB64-like
TrEMBLA0A0Q3LJ831e-29A0A0Q3LJ83_BRADI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-21myb domain protein 77