PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G060400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 231aa MW: 25415.8 Da PI: 9.9847 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 54.3 | 3.2e-17 | 9 | 61 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslG...ghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 k++Y +ClkNhA+ lG g DGC+ f++ + l C CgCHR++HRr + Brast02G060400.1.p 9 KATYLDCLKNHAVVLGqvvGDRQDGCRQFVQPA-----GNCLDCVSCGCHRSWHRRVM 61 689***********9944456689******983.....358***************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.5E-13 | 11 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-6 | 11 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 14.678 | 12 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.6E-7 | 126 | 188 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-14 | 127 | 189 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSDVVSFRKA TYLDCLKNHA VVLGQVVGDR QDGCRQFVQP AGNCLDCVSC GCHRSWHRRV 60 MFDVSVSVSP TPQPLPRQRQ GVPAAVPSED SSATESDTNA VQRLVPPPQQ QQRPAPVAAA 120 PMMVVAPEQV RRPPTYFSQE KKARMWELSE RIGWRYEQRN LATIEAGCRE IGVTCRAFKN 180 WMNNTKSKNH IRAHPRASVS ANNNNNNNNI TPPAAARSTP TLPPPPPAST * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G060400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010230244.1 | 4e-76 | zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A0Q3K0M2 | 8e-75 | A0A0Q3K0M2_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22756 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 4e-22 | homeobox protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G060400.1.p |