PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G050400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 348aa    MW: 39747 Da    PI: 5.0573
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G050400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.81.5e-32461362101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+++++ d++++ ++sw + gnsfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++
  Brast02G050400.1.p  46 FLTKTFDLVADPATDGVVSWGRAGNSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFIRGQRQ 127
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll+ ikr+k
  Brast02G050400.1.p 128 LLKMIKRRK 136
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.01E-3442135IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-3642135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5842135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-184669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.2E-3046135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-188496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-1897109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MMEQAAVLPV PGRVKEERSP EEEEEEAAAE KPRPMEGLHE TGPPPFLTKT FDLVADPATD  60
GVVSWGRAGN SFVVWDPHVF AAVLLPRFFK HNNFSSFVRQ LNTYGFRKID PDRWEFANEG  120
FIRGQRQLLK MIKRRKPLSY LPSSQQQVLG SCLEVGQFGM DEEIEMLKRD KNALLAEVVK  180
LRHEQQSTRA DMRAMEERLH LAEQKQLQMM GFLARAMQNP DLFLQLIEQQ DKWKDDASLK  240
KRRRSIDMAP FLSPGGGSQK EQHESTILSE QREFVEPNQP GFSELENLAL SIQGIGKGTK  300
DDKGCRNQVS GEAELTDDFW EELLSEGMRD EAGMPEQERR RPRYVDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-264413518120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134LKMIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G050400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0611930.0KF061193.1 Triticum aestivum heat shock factor HsfA2d (HSFA2d) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314977.10.0LOW QUALITY PROTEIN: heat stress transcription factor A-2d
SwissprotQ8H7Y60.0HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A0Q3HLG00.0A0A0Q3HLG0_BRADI; Uncharacterized protein
STRINGBRADI1G74350.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-95heat shock transcription factor A6B