PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G043900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 1501aa    MW: 165567 Da    PI: 6.4403
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G043900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-0513901415123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                          ++C    C+++F ++ +L+ H+r+ +
  Brast02G043900.1.p 1390 FQCDieCCDMTFDTRADLRAHQRNiC 1415
                          899999*****************877 PP
2zf-C2H212.50.0004314151437323
                          ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                          C+   Cgk+Fs++ +LkrH+ +H
  Brast02G043900.1.p 1415 CTdeSCGKRFSSHKYLKRHQCVH 1437
                          77778***************998 PP
3zf-C2H212.60.000414431467123
                          EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirtH 23  
                          +kCp   Cg++F+ +   + H+r+H
  Brast02G043900.1.p 1443 FKCPwdGCGMTFKWSWAQTEHMRVH 1467
                          89*********************99 PP
4zf-C2H213.20.0002614731499123
                          EEET..TTTEEESSHHHHHHHHHH..T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                          ykC   dCg+sF+  s++ rH r+  H
  Brast02G043900.1.p 1473 YKCLvpDCGQSFRYVSDYSRHRRKfnH 1499
                          899999*****************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005458.0E-122768IPR003349JmjN domain
PROSITE profilePS5118313.5362869IPR003349JmjN domain
PfamPF023754.4E-132962IPR003349JmjN domain
SuperFamilySSF511977.69E-27134173No hitNo description
SMARTSM005585.9E-45221390IPR003347JmjC domain
SuperFamilySSF511977.69E-27222386No hitNo description
PROSITE profilePS5118435.242224390IPR003347JmjC domain
PfamPF023734.2E-36254373IPR003347JmjC domain
SMARTSM003553413901412IPR015880Zinc finger, C2H2-like
SMARTSM003552.314131437IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.58814131442IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-714151442IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014151437IPR007087Zinc finger, C2H2
SuperFamilySSF576677.52E-1614241475No hitNo description
Gene3DG3DSA:3.30.160.608.6E-1414431467IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.69214431472IPR007087Zinc finger, C2H2
SMARTSM003556.0E-514431467IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014451467IPR007087Zinc finger, C2H2
SuperFamilySSF576677.38E-614671496No hitNo description
Gene3DG3DSA:3.30.160.601.3E-1114681495IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1214731499IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.13614731500IPR007087Zinc finger, C2H2
PROSITE patternPS00028014751499IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1501 aa     Download sequence    Send to blast
MPPTPTPPAA VSRTEPPVPA WLRGLPRAPE YRPTESEFAD PIAFLSRVER EAAAYGICKV  60
IPPYHRPSRR YVFAHLNRSL VSNDASNPAA PAASNSAPSP SPASAAVFTT RHQELGTARR  120
GRPPPQVLKQ VWQSGERYTL EQFEAKSRAF SKTHLSGLRD PTPLAVESLF WKASADRPIY  180
IEYANDVPGS GFAASAQSRR LKKRKRESVP MDEGEKATGW KLSSSPWNLQ AIARAPGSLT  240
RFMPDDVPGV TSPMVYIGML FSWFAWHIED HELHSLNFLH TGAPKTWYAV PGDRAAELEE  300
VIRVHGYGGN PDRLASLAVL GEKTTLMSPE VLVASGLPCC RLVQYPGEFV VTFPRAYHIG  360
FSHGFNCGEA ANFATPQWLK FAKEAAVRRA VMNYLPMLSH QQLLYLLAVS FISRTPRELL  420
YGIRTSRLRD RRKEDRELLV KQEFLQDMIS ENELLYSFLK KKSIDNAVLW EPDLLPSSTA  480
LHSCSSVPKA PEKGDDGCSV KSIPVGNGSF DGIACMPGIQ AKCVSMDSKS SDDVSALEGQ  540
KLDTDTDDEG DLPFDLSIDS GSLTCVACGI LGYPFMAILQ PSKKALEEMS LVDRESLRLN  600
FEKGNHSNVP PCSPDVNNSE RPLIANRPSS PVVQASITHQ NVKSHKSGVS FTEKQLDGPL  660
LLHSNGSHSC SSENTLNLCI KTETTETEIL SDGFGTESSK QTGRVDIDSR VVKSCADSLN  720
WNVTSAFVRP RIFCLQHALE IEELLEGKGG SHALIICHSD YTKLKALAIS IAEEIEFQFD  780
CKDVPLANAS KSDLHLINIS IDDEGYKEDG RDWTSQMGLN MKYFAKIRKE TPGSQEQPPL  840
SFWKKLDIAD RPSPISVVPN LKWLCRKTRT PYKVVGYVSS PNAAVTPENI DPAVTKTEMG  900
TSGSVHKNGE KQGTAQQDAP LQSSGLREPD DLIDVFTCPE ENDKDMHCLI DIPIALAEYP  960
MMHQVCEGPA SVSTCELDDL VSVSTCDDSQ DSPVVSDEFI FEQQCVQSDE VTSSTSVFVQ  1020
QFLVNGSITA EGSSNLENMS SCNVTSECQD KQLRGQQDQE NVKFCYNADR NLALVATLEN  1080
GENCAKTSNC CDTVLEANKS ATQAVSNQEM PIGSIKPVQI DTSYFSAKAV KLKSNNATKL  1140
QQGYPKRTVI DSEGVEAPSM TALSGENGNP VHAGTDSLDI LLGVLAEETV LADAPGKDEI  1200
GKASLTLMTL ASNDHSADDA TENEVVEMPS SSVGASLSCK GQTLSDLASD KLLGIQNPEI  1260
QQNQENTEDV CGRNYLSFKY DRVAKKSKKS CTPMMNQYVD RPDIVSRSIG SSNRTNIICY  1320
VRRKRKRKRG SKLNIDSSQS LGSFTRSPCE SLRPRTKPAV IEVEETTLQT KTVQASSANK  1380
GKRTKVVEIF QCDIECCDMT FDTRADLRAH QRNICTDESC GKRFSSHKYL KRHQCVHSNE  1440
RPFKCPWDGC GMTFKWSWAQ TEHMRVHTGE RPYKCLVPDC GQSFRYVSDY SRHRRKFNHY  1500
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-73214048346Transcription factor jumonji (Jmj) family protein
6ip4_A2e-73214048346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198206RRLKKRKRE
213211326RRKRKR
313211327RRKRKRK
413221327RKRKRK
513221328RKRKRKR
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G043900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229202.10.0lysine-specific demethylase SE14 isoform X1
SwissprotQ10RP40.0SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0Q3HKZ20.0A0A0Q3HKZ2_BRADI; Uncharacterized protein
STRINGBRADI1G74997.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein