PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G042400.8.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 762aa    MW: 81347.3 Da    PI: 5.08
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G042400.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044648673123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         ++C   +C ++F+ + +L  H ++ +
  Brast02G042400.8.p 648 FECDieYCRMTFKKQADLSLHKKNmC 673
                         799999***************99866 PP
2zf-C2H214.69.5e-05673695323
                         ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                         C+   Cg+ F+ + +LkrH+r H
  Brast02G042400.8.p 673 CTlkSCGRQFRAHKYLKRHQRIH 695
                         77779****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035550648670IPR015880Zinc finger, C2H2-like
SMARTSM003550.73671695IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-5671694IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.632671700IPR007087Zinc finger, C2H2
PROSITE patternPS000280673695IPR007087Zinc finger, C2H2
SuperFamilySSF576674.48E-11687729No hitNo description
Gene3DG3DSA:3.30.160.603.6E-13695722IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.6E-4701725IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.923701730IPR007087Zinc finger, C2H2
PROSITE patternPS000280703725IPR007087Zinc finger, C2H2
SuperFamilySSF576672.44E-8717754No hitNo description
Gene3DG3DSA:3.30.160.604.0E-9723752IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035550731753IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MRIRRYAARL LASSNPASAA AGAASSPSPR PAAPWFHAAA DDCAICELTR CSPPEVAPDG  60
VKHKAHIARL TPEGELKSDE RVGVPQSPPI PREEIFPAHE CKIDDERSAS KRDAALEVEI  120
GASGVSSPPV HPEEIIPAHE CEIDDERPAS KHDAALEVEI GASGVSSPPV LPEEIIPAHG  180
CKIDDELSVG KHDATLEVEI GASGVSSPPV PPQEIIPAHE CKIVDDRSVS KDGIALEFEM  240
GASGASRAAV RPDDMGKTTL VSEAVTEPAD TGGAFIVNED TDEQGGTASL VNASVTEQEV  300
TGGASLVSGL FSEPEVIRGV SLANEATTKQ EVSERVSLVS EATTEPAAIV TASEVIRGAP  360
LDGKGNAEPD LKMGASLVNE SASKMDVKRV ASLVFEAVTR PALPESVSLV SEVVTEPGVN  420
GAAFLDNEVS VEPEVAGAPS LVDESTKQAV TGETCTVKEL AAEPDVVGRA SACRGDGNAD  480
LNEQQPPDYD PDISSIQGES AGEGVASGVQ PSRDHAADTT CSVNTRNSDP VGDKSPTGEE  540
VAPDDDTPSI SCVSDILARS VGKSGRTDII CYARRRGKRK LNIVEIKRKQ IKMDDGAIYD  600
QKAALERIAP RVSKPIAGSA EIKLADIKRE LIDNSASSKG KKSKMRRFEC DIEYCRMTFK  660
KQADLSLHKK NMCTLKSCGR QFRAHKYLKR HQRIHDDDTP YKCPWEGCSM AFKWTWALAE  720
HFQVHTGDKP YKCKTPGCGR IYKFVSDFTR HRMRCKPQRV I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A4e-4364875423129Lysine-specific demethylase REF6
6a58_A4e-4364875423129Lysine-specific demethylase REF6
6a59_A4e-4364875423129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1573579RRRGKRK
2573580RRRGKRKL
3573588RRRGKRKLNIVEIKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G042400.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311074.10.0uncharacterized protein LOC100837146 isoform X1
TrEMBLA0A0Q3SF010.0A0A0Q3SF01_BRADI; Uncharacterized protein
STRINGBRADI1G75127.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.12e-40relative of early flowering 6