PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G042400.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 789aa MW: 84324.6 Da PI: 5.0543 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00046 | 648 | 673 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C +C ++F+ + +L H ++ + Brast02G042400.3.p 648 FECDieYCRMTFKKQADLSLHKKNmC 673 799999***************99866 PP | |||||||
2 | zf-C2H2 | 14.6 | 9.8e-05 | 673 | 695 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cg+ F+ + +LkrH+r H Brast02G042400.3.p 673 CTlkSCGRQFRAHKYLKRHQRIH 695 77779****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 50 | 648 | 670 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.4E-5 | 671 | 694 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.73 | 671 | 695 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.632 | 671 | 700 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 673 | 695 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.27E-11 | 687 | 729 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-13 | 695 | 722 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.6E-4 | 701 | 725 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.923 | 701 | 730 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 703 | 725 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.68E-8 | 717 | 754 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.0E-9 | 723 | 752 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 50 | 731 | 753 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 789 aa Download sequence Send to blast |
MRIRRYAARL LASSNPASAA AGAASSPSPR PAAPWFHAAA DDCAICELTR CSPPEVAPDG 60 VKHKAHIARL TPEGELKSDE RVGVPQSPPI PREEIFPAHE CKIDDERSAS KRDAALEVEI 120 GASGVSSPPV HPEEIIPAHE CEIDDERPAS KHDAALEVEI GASGVSSPPV LPEEIIPAHG 180 CKIDDELSVG KHDATLEVEI GASGVSSPPV PPQEIIPAHE CKIVDDRSVS KDGIALEFEM 240 GASGASRAAV RPDDMGKTTL VSEAVTEPAD TGGAFIVNED TDEQGGTASL VNASVTEQEV 300 TGGASLVSGL FSEPEVIRGV SLANEATTKQ EVSERVSLVS EATTEPAAIV TASEVIRGAP 360 LDGKGNAEPD LKMGASLVNE SASKMDVKRV ASLVFEAVTR PALPESVSLV SEVVTEPGVN 420 GAAFLDNEVS VEPEVAGAPS LVDESTKQAV TGETCTVKEL AAEPDVVGRA SACRGDGNAD 480 LNEQQPPDYD PDISSIQGES AGEGVASGVQ PSRDHAADTT CSVNTRNSDP VGDKSPTGEE 540 VAPDDDTPSI SCVSDILARS VGKSGRTDII CYARRRGKRK LNIVEIKRKQ IKMDDGAIYD 600 QKAALERIAP RVSKPIAGSA EIKLADIKRE LIDNSASSKG KKSKMRRFEC DIEYCRMTFK 660 KQADLSLHKK NMCTLKSCGR QFRAHKYLKR HQRIHDDDTP YKCPWEGCSM AFKWTWALAE 720 HFQVHTGDKP YKCKTPGCGR IYKFVSDFTR HRMRCKPQRC IDDEHRVSKD YVGLEVTRGA 780 CVVNGDTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 7e-43 | 648 | 754 | 23 | 129 | Lysine-specific demethylase REF6 |
6a58_A | 7e-43 | 648 | 754 | 23 | 129 | Lysine-specific demethylase REF6 |
6a59_A | 7e-43 | 648 | 754 | 23 | 129 | Lysine-specific demethylase REF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 573 | 579 | RRRGKRK |
2 | 573 | 580 | RRRGKRKL |
3 | 573 | 588 | RRRGKRKLNIVEIKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G042400.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024311080.1 | 0.0 | uncharacterized protein LOC100837146 isoform X3 | ||||
TrEMBL | A0A0Q3SF01 | 0.0 | A0A0Q3SF01_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G75127.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 4e-40 | relative of early flowering 6 |
Link Out ? help Back to Top | |
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Phytozome | Brast02G042400.3.p |