PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast02G042400.15.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 803aa MW: 85558 Da PI: 4.9847 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00047 | 688 | 713 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C +C ++F+ + +L H ++ + Brast02G042400.15.p 688 FECDieYCRMTFKKQADLSLHKKNmC 713 799999***************99866 PP | |||||||
2 | zf-C2H2 | 14.5 | 0.0001 | 713 | 735 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cg+ F+ + +LkrH+r H Brast02G042400.15.p 713 CTlkSCGRQFRAHKYLKRHQRIH 735 77779****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 50 | 688 | 710 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.632 | 711 | 740 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.4E-5 | 711 | 734 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.73 | 711 | 735 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 713 | 735 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.38E-11 | 727 | 769 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.2E-13 | 735 | 762 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.923 | 741 | 770 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.6E-4 | 741 | 765 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 743 | 765 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.74E-8 | 757 | 794 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.1E-9 | 763 | 792 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 50 | 771 | 793 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 803 aa Download sequence Send to blast |
MRIRRYAARL LASSNPASAA AGAASSPSPR PAAPWFHAAA DDCAICELTR CSPPEVAPDG 60 VKHKAHIARL TPEGELKSDE RVGVPQSPPI PREEIFPAHE CKIDDERSAS KRDAALEVEI 120 GASGVSSPPV HPEEIIPAHE CEIDDERPAS KHDAALEVEI GASGVSSPPV LPEEIIPAHG 180 CKIDDELSVG KHDATLEVEI GASGVSSPPV LPEEIIPAHG CKIDDELSVG KHDATLEVEI 240 GASGVSSPPV PPQEIIPAHE CKIVDDRSVS KDGIALEFEM GASGASRAAV RPDDMGKTTL 300 VSEAVTEPAD TGGAFIVNED TDEQGGTASL VNASVTEQEV TGGASLVSGL FSEPEVIRGV 360 SLANEATTKQ EVSERVSLVS EATTEPAAIV TASEVIRGAP LDGKGNAEPD LKMGASLVNE 420 SASKMDVKRV ASLVFEAVTR PALPESVSLV SEVVTEPGVN GAAFLDNEVS VEPEVAGAPS 480 LVDESTKQAV TGETCTVKEL AAEPDVVGRA SACRGDGNAD LNEQQPPDYD PDISSIQGES 540 AGEGVASGVQ PSRDHAADTT CSVNTRNSDP VGDKSPTGEE VAPDDDTPSI SCVSDILARS 600 VGKSGRTDII CYARRRGKRK LNIVEIKRKQ IKMDDGAIYD QKAALERIAP RVSKPIAGSA 660 EIKLADIKRE LIDNSASSKG KKSKMRRFEC DIEYCRMTFK KQADLSLHKK NMCTLKSCGR 720 QFRAHKYLKR HQRIHDDDTP YKCPWEGCSM AFKWTWALAE HFQVHTGDKP YKCKTPGCGR 780 IYKFVSDFTR HRMRCKPQRK TT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 3e-43 | 688 | 802 | 23 | 137 | Lysine-specific demethylase REF6 |
6a58_A | 3e-43 | 688 | 802 | 23 | 137 | Lysine-specific demethylase REF6 |
6a59_A | 3e-43 | 688 | 802 | 23 | 137 | Lysine-specific demethylase REF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 613 | 619 | RRRGKRK |
2 | 613 | 620 | RRRGKRKL |
3 | 613 | 628 | RRRGKRKLNIVEIKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast02G042400.15.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024311074.1 | 0.0 | uncharacterized protein LOC100837146 isoform X1 | ||||
TrEMBL | A0A2K2DV82 | 0.0 | A0A2K2DV82_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G75127.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 3e-40 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast02G042400.15.p |