PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G042400.13.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 802aa    MW: 85439.9 Da    PI: 4.9493
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G042400.13.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047688713123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          ++C   +C ++F+ + +L  H ++ +
  Brast02G042400.13.p 688 FECDieYCRMTFKKQADLSLHKKNmC 713
                          799999***************99866 PP
2zf-C2H214.50.0001713735323
                          ET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                          C+   Cg+ F+ + +LkrH+r H
  Brast02G042400.13.p 713 CTlkSCGRQFRAHKYLKRHQRIH 735
                          77779****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035550688710IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.632711740IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-5711734IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.73711735IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280713735IPR007087Zinc finger, C2H2
SuperFamilySSF576674.38E-11727769No hitNo description
Gene3DG3DSA:3.30.160.603.2E-13735762IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.923741770IPR007087Zinc finger, C2H2
SMARTSM003555.6E-4741765IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280743765IPR007087Zinc finger, C2H2
SuperFamilySSF576672.68E-8757794No hitNo description
Gene3DG3DSA:3.30.160.604.1E-9763792IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035550771793IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MRIRRYAARL LASSNPASAA AGAASSPSPR PAAPWFHAAA DDCAICELTR CSPPEVAPDG  60
VKHKAHIARL TPEGELKSDE RVGVPQSPPI PREEIFPAHE CKIDDERSAS KRDAALEVEI  120
GASGVSSPPV HPEEIIPAHE CEIDDERPAS KHDAALEVEI GASGVSSPPV LPEEIIPAHG  180
CKIDDELSVG KHDATLEVEI GASGVSSPPV LPEEIIPAHG CKIDDELSVG KHDATLEVEI  240
GASGVSSPPV PPQEIIPAHE CKIVDDRSVS KDGIALEFEM GASGASRAAV RPDDMGKTTL  300
VSEAVTEPAD TGGAFIVNED TDEQGGTASL VNASVTEQEV TGGASLVSGL FSEPEVIRGV  360
SLANEATTKQ EVSERVSLVS EATTEPAAIV TASEVIRGAP LDGKGNAEPD LKMGASLVNE  420
SASKMDVKRV ASLVFEAVTR PALPESVSLV SEVVTEPGVN GAAFLDNEVS VEPEVAGAPS  480
LVDESTKQAV TGETCTVKEL AAEPDVVGRA SACRGDGNAD LNEQQPPDYD PDISSIQGES  540
AGEGVASGVQ PSRDHAADTT CSVNTRNSDP VGDKSPTGEE VAPDDDTPSI SCVSDILARS  600
VGKSGRTDII CYARRRGKRK LNIVEIKRKQ IKMDDGAIYD QKAALERIAP RVSKPIAGSA  660
EIKLADIKRE LIDNSASSKG KKSKMRRFEC DIEYCRMTFK KQADLSLHKK NMCTLKSCGR  720
QFRAHKYLKR HQRIHDDDTP YKCPWEGCSM AFKWTWALAE HFQVHTGDKP YKCKTPGCGR  780
IYKFVSDFTR HRMRCKPQRV I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-4368879423129Lysine-specific demethylase REF6
6a58_A3e-4368879423129Lysine-specific demethylase REF6
6a59_A3e-4368879423129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1613619RRRGKRK
2613620RRRGKRKL
3613628RRRGKRKLNIVEIKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G042400.13.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311074.10.0uncharacterized protein LOC100837146 isoform X1
TrEMBLA0A0Q3SF010.0A0A0Q3SF01_BRADI; Uncharacterized protein
STRINGBRADI1G75127.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.13e-40C2H2 family protein