PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G027200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 262aa    MW: 28031.7 Da    PI: 6.7357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G027200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-051381781055
                         HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         r RR+ri ++ +eL +l+P         +l+ ae+L +A ++++ Lq
  Brast02G027200.1.p 138 RERRKRISEKTAELSRLVPGgH------RLNTAEMLHEAGRHVRLLQ 178
                         99*****************955......9**********99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.664128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-6134181No hitNo description
SMARTSM003533.0E-5134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-9136192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-6138184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MALSFFRPLL RHLDADPGMS FVHDPIDPAV NSRIDHFLDL DTSTSFPDDG DDDPRCDKMP  60
RGAGIGYDAD ACLSFSPAGN GGSHGALHWS WSNGDGCQEH PQPPEFVMPL PAPPLFVRGA  120
DAKKLGEGAS NGCRSAARER RKRISEKTAE LSRLVPGGHR LNTAEMLHEA GRHVRLLQAQ  180
LGVLALMRTI HQQPSSMSPK ERTMHALLAS GGVQGRLAAE GKCLVPRNLV DAMAQDTAVK  240
SNAALSRDLA PFADSLPVPE P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast02G027200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239355.14e-56uncharacterized protein LOC104585091
TrEMBLI1HA574e-98I1HA57_BRADI; Uncharacterized protein
STRINGBRADI1G76440.17e-99(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.13e-22bHLH family protein