PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G019600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Protein Properties

Length: 324aa MW: 34661.9 Da PI: 9.9953

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G019600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	94.2	9.3e-30	35	147	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+kv tpsdv+k++rlv+pk++ae++ gg ++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD Brast02G019600.1.p 35 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldstqaaasstGGG--GGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGD 123 89***********************998888777665333..7789*************************************** PP EEEEE..E-SS.SEE..EEEEE-S CS B3 79 fvvFk..ldgr.sefelvvkvfrk 99 +v F + ++ +++l++ ++r+ Brast02G019600.1.p 124 TVSFGrgVGSEaAKGRLFIDWRRR 147 **95433556888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.4E-39	27	156	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.44E-28	32	130	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.27E-24	33	127	No hit	No description
PROSITE profile	PS50863	13.324	35	148	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-21	35	148	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.8E-27	35	147	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MEFTAIRSPA SGRTSELDGG PSSTTTDPVE KEHMFDKVVT PSDVGKLNRL VIPKQHAEKY 60 FPLDSTQAAA SSTGGGGGLL LSFEDRTGKP WRFRYSYWNS SQSYVMTKGW SRFVKEKRLD 120 AGDTVSFGRG VGSEAAKGRL FIDWRRRPDN SMASAALPPY GGRRFTALLP NSVPFAPWTM 180 AARAQQQGQH PFFSGSGGRA AAFVPQPPPS FVYDDGCYGA APGGHGGGRQ VLYYRPQQQQ 240 HAAVVLESVP VRMGMAAMAA AAAVPSSGTK RVRLFGVNLD SEEEDSNYSR PALSTMQLMS 300 PASSTSTSSS SAGKARCSLN LDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	4e-59	30	148	3	114	B3 domain-containing transcription factor NGA1
5os9_B	4e-59	30	148	3	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G019600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210491	2e-65	AC210491.1 Oryza glaberrima clone OG_BBa0088K23, complete sequence.
GenBank	CP012611	2e-65	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBank	CT833296	2e-65	CT833296.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA019E02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003558950.1	1e-161	B3 domain-containing protein Os03g0120900
Swissprot	Q8LMR9	1e-101	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	I1HAE4	1e-159	I1HAE4_BRADI; Uncharacterized protein
STRING	BRADI1G77150.1	1e-160	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01030.1	1e-59	B3 family protein

Link Out ? help Back to Top
Phytozome	Brast02G019600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]