PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast02G018500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 703aa MW: 77639.2 Da PI: 5.7355

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast02G018500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.5	1.1e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd Brast02G018500.1.p 6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKD 95 79**************************.99**********95334455777***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v s ++++vg+kktLv+y+grap+g++tdWvmheyrl Brast02G018500.1.p 96 RKVNS-QRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 *.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.817	6	156	IPR003441	NAC domain
Pfam	PF02365	1.7E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QRRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDESECEI DNGLQDAYAL CRIFKKTAPG PKIIEHYGAV QYHAEQPQWA 180 ASCSVERSPT LDVSCDGRGG GDEFETNSFS FPTEAASMAS GSMHGGCGFG MPMISGGAPQ 240 EDGRWMQFLS EDAFNATNPF FMNPASSSNF SCFPSKVDVA LECARLQYRL DLPPPLEVED 300 FPQDVSLDTK TGILRSNPNE VDILQEFLSV ASASQELING SSSSYTETWL GGAGTSSAGN 360 HYMNELSSLV DLGATKAKEE ADNFYQLCSI GASMTSRDEQ ARLVEISDIE EFKEEKRPVE 420 NLRGVKLVNN DLGEIVVEGD EGNQTEVITH YPIKDAAGTS GEAGHHLTDA TDDDTAPIFS 480 QSQPDDFAII AAAGFHDEEG ENASLDLYDK QVVNVQHGLF VSRVGAAETF FHRVEPPNKV 540 SFHLNPAVSR SVGKAIFEKI HCYYHYHPVT SKVSGSSKVS SIFGKVKALV RDKFMARKPS 600 LSLHRRSEET ATLSELLQIV SLLVAAPSNK EVTEQGELVA RKKAKEPVMM KPPVWGCGHG 660 CDNPWLPKRN NSKGISGMFF SGKWAFLTSA LLAIRAPAGS CN*

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QRRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDESECEI DNGLQDAYAL CRIFKKTAPG PKIIEHYGAV QYHAEQPQWA  180
ASCSVERSPT LDVSCDGRGG GDEFETNSFS FPTEAASMAS GSMHGGCGFG MPMISGGAPQ  240
EDGRWMQFLS EDAFNATNPF FMNPASSSNF SCFPSKVDVA LECARLQYRL DLPPPLEVED  300
FPQDVSLDTK TGILRSNPNE VDILQEFLSV ASASQELING SSSSYTETWL GGAGTSSAGN  360
HYMNELSSLV DLGATKAKEE ADNFYQLCSI GASMTSRDEQ ARLVEISDIE EFKEEKRPVE  420
NLRGVKLVNN DLGEIVVEGD EGNQTEVITH YPIKDAAGTS GEAGHHLTDA TDDDTAPIFS  480
QSQPDDFAII AAAGFHDEEG ENASLDLYDK QVVNVQHGLF VSRVGAAETF FHRVEPPNKV  540
SFHLNPAVSR SVGKAIFEKI HCYYHYHPVT SKVSGSSKVS SIFGKVKALV RDKFMARKPS  600
LSLHRRSEET ATLSELLQIV SLLVAAPSNK EVTEQGELVA RKKAKEPVMM KPPVWGCGHG  660
CDNPWLPKRN NSKGISGMFF SGKWAFLTSA LLAIRAPAGS CN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-55	1	162	12	171	NO APICAL MERISTEM PROTEIN
4dul_A	4e-55	1	162	12	171	NAC domain-containing protein 19
4dul_B	4e-55	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast02G018500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727978	1e-169	KJ727978.1 Zea mays clone pUT6092 NAC transcription factor (NAC78) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003562178.1	0.0	uncharacterized protein LOC100843938 isoform X2
TrEMBL	I1HAF2	0.0	I1HAF2_BRADI; Uncharacterized protein
STRING	BRADI1G77217.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6624	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-119	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	Brast02G018500.1.p