PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G414700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-X1
Protein Properties Length: 863aa    MW: 94776.1 Da    PI: 8.4236
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G414700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.91.6e-06357376119
            zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                         CG+HkC + CH+GpC++ C+
  Brast01G414700.1.p 357 CGRHKCPERCHRGPCDKvCR 376
                         *****************997 PP
2zf-NF-X124.46.2e-08399418120
            zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                         CG+HkCq++CH+G C pCp+
  Brast01G414700.1.p 399 CGNHKCQSPCHRGACSPCPL 418
                         ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.12E-596154No hitNo description
PROSITE profilePS500899.05297148IPR001841Zinc finger, RING-type
PROSITE patternPS01359097147IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.2197215IPR000967Zinc finger, NF-X1-type
PfamPF014220.018198214IPR000967Zinc finger, NF-X1-type
CDDcd060086.92E-8240288No hitNo description
SMARTSM004380.025250269IPR000967Zinc finger, NF-X1-type
PfamPF014220.019252267IPR000967Zinc finger, NF-X1-type
CDDcd060087.19E-8293333No hitNo description
SMARTSM004380.022303322IPR000967Zinc finger, NF-X1-type
PfamPF014220.25303321IPR000967Zinc finger, NF-X1-type
CDDcd060081.43E-7347392No hitNo description
SMARTSM004380.0028357377IPR000967Zinc finger, NF-X1-type
PfamPF014225.0E-4357376IPR000967Zinc finger, NF-X1-type
CDDcd060082.08E-10391437No hitNo description
SMARTSM004384.3E-4399418IPR000967Zinc finger, NF-X1-type
PfamPF014221.1E-5399417IPR000967Zinc finger, NF-X1-type
SMARTSM0043825462477IPR000967Zinc finger, NF-X1-type
PfamPF0142234466476IPR000967Zinc finger, NF-X1-type
SMARTSM00438140485530IPR000967Zinc finger, NF-X1-type
PfamPF0142218485494IPR000967Zinc finger, NF-X1-type
SMARTSM00438130567609IPR000967Zinc finger, NF-X1-type
PfamPF014220.34567577IPR000967Zinc finger, NF-X1-type
SMARTSM004380.32619637IPR000967Zinc finger, NF-X1-type
PfamPF014220.51620636IPR000967Zinc finger, NF-X1-type
SMARTSM004386.2682703IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    Send to blast
MPSSYAAAAS SSRKPVAVAA ATATARRPAA PANPSHFSDS DPSSCSSSSG DETDLAASDP  60
ATASVISTYL SVAGDGADLA KVRLFLTSAA RRRSPPCLIC LDPIRPSDPV WSCSASCFAL  120
LHLPCIQSWA HQSSSAAPSP TWGCPKCRVA YPKSQTPTSY HCFCSKTVDP PADPWILPHS  180
CGEVCDRPLN SNADSGCQHT CLLRCHPGPC PPCPTVVPNA RCFCGAHREP RRCARQRYSC  240
ASKCNKRLSC ELHRCPVDCH DGPCPPCAVR GNHKCECGET MVERLCSERV FQCKRECGGM  300
LDCGKHRCER GCHGGTCGEC PLRGRRTCPC GKTDYPRLEC DVEAATCGST CEKVLGCGRH  360
KCPERCHRGP CDKVCRLVIK KSCRCGGLKK EICDRRLRCG NHKCQSPCHR GACSPCPLMK  420
TISCFCGKTH FEVPCGTEKN QKPPKCSKKC NIDRLCRHKF DCRPHKCHYG ACPPCKLICA  480
EEFSCGHKCK ERCHGSIPPP NPEFTLKPTK KKMEKHIECS PGTPCPPCQE VILVPCLGQH  540
IGQERAMPCS KRRPFPCQNL CGNPLPCGNH YCTKACHVLE IPLSQPKDDT IFSLQTKNTL  600
AEPCEECDLP CQRARDSPCT HPCPLPCHES DCPPCKVLVK RSCHCGAMTH SFECMHYNNL  660
NAKEQLKVRS CGGPCHRKLP NCPHLCSEIC HPDQCLSVDQ CMKKVNVRCA CNTLKKEWVC  720
QDVLKEYRRS DRDPKEVPKG QFGAGLLPCG GDCAKKVKVS SAELHLRKVQ EIKSPAVEVA  780
NVPKRKKKRE RGGQEPAPVS MLQKIKDFFS GPLLKFLLLV IAIAGLVAFV VVSVTFIYQI  840
SDWMNEMEEQ RARQRNPRAP RL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G414700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2525650.0AK252565.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156f05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569260.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0Q3MD450.0A0A0Q3MD45_BRADI; Uncharacterized protein
STRINGMLOC_4879.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors