PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G395700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 334aa    MW: 35763.2 Da    PI: 4.5262
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G395700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.77e-14121165351
                 AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaark 51 
                         y+GVr +k +g+++AeIr  +     + kr++lg+f+ta  A  a+ aa +
  Brast01G395700.1.p 121 YRGVRLRK-WGKYAAEIRNpF-----SgKRVWLGTFDTAAAASVAYQAASR 165
                         9*****99.**********66.....46**********8888888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.227120182IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-15120170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-19120171IPR001471AP2/ERF domain
SMARTSM003803.4E-13120184IPR001471AP2/ERF domain
PfamPF008475.2E-8120163IPR001471AP2/ERF domain
PRINTSPR003673.2E-8121132IPR001471AP2/ERF domain
CDDcd000182.16E-14121152No hitNo description
PRINTSPR003673.2E-8143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAPLSQHQIR LRKALAKKPK TKMLSGFGVK PSAAFFKPQP PPPQPAPSAL PSRRRVRVMY  60
DDPYATDSDT DDEEAAPAAS SKRCYEVYLG KAPPKPVAKP VTLTATAVAA TCASSMNAES  120
YRGVRLRKWG KYAAEIRNPF SGKRVWLGTF DTAAAASVAY QAASRSFIEE KRRRRGEALG  180
SPAASAASTP TASSSSSTSA APFAHPSPSS VLEATKPAAA EALSPEPTPI LTMASTEAGQ  240
LPDDPEFYQD LLRGLQLPDI DPMDFRAGLD ALDVSEAPAY LDGEQDLLLG DFADEDLELD  300
IDLDDIDDDF LEMPGVDFGR GMDEFLQTVD FCV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G395700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568026.11e-158dehydration-responsive element-binding protein 2D
TrEMBLI1HBN61e-157I1HBN6_BRADI; Uncharacterized protein
STRINGBRADI2G02100.11e-158(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.14e-12ERF domain protein 11