PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G388200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family RAV
Protein Properties Length: 354aa    MW: 38346.3 Da    PI: 8.4
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G388200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.64.8e-1166114155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s++kGV   + +grW A+I++      ++r++lg+f  +  Aa+a++ a+++++g
  Brast01G388200.1.p  66 SRFKGVVPQP-NGRWGAQIYEK-----HARVWLGTFPDEPSAARAYDVAALRFRG 114
                         689***9788.8*********3.....5**********66*************98 PP
2B394.76.2e-30194285184
                         EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                         f+k+ tpsdv+k++rlv+pk++ae+h        g++ ++++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+
  Brast01G388200.1.p 194 FEKAVTPSDVGKLNRLVVPKQHAERHfpepekrtGSSGNKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLAAGDTIVFS 284
                         89************************9999888855555999************************************************9 PP

                         E CS
                  B3  84 l 84 
                          
  Brast01G388200.1.p 285 C 285
                         4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-666114IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1566123IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-1967123IPR001471AP2/ERF domain
CDDcd000184.80E-2167121No hitNo description
PROSITE profilePS5103220.08667122IPR001471AP2/ERF domain
SMARTSM003803.0E-2567128IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.0E-36190285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-30193285IPR015300DNA-binding pseudobarrel domain
CDDcd100179.94E-28193283No hitNo description
SMARTSM010197.7E-20194294IPR003340B3 DNA binding domain
PfamPF023622.4E-27194285IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155194303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSRDPHSTAT PQIMDDDMPE PDYSSSTESP MDTEPPYEAP APDSPSSSPA PASSSRPPPA  60
SSSSSSRFKG VVPQPNGRWG AQIYEKHARV WLGTFPDEPS AARAYDVAAL RFRGRDAVTN  120
YHHQSSFSSS SSSSPAATAS ELAFLAAHSK AEIVDMLRKH TYADELRQGL LRGHAGHGAG  180
ARVRTPAWAR EVLFEKAVTP SDVGKLNRLV VPKQHAERHF PEPEKRTGSS GNKGVLLNFE  240
DGEGKVWRFR YSYWNSSQSY VLTKGWSRFV REKGLAAGDT IVFSCASGAY GNNGSPDQIQ  300
RQLFIDYRKM ATTTSKDADA EESRSVVKLF GVDIAGGGGG AGDRSADERY TVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-4519132011124DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G388200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230438.20.0putative AP2/ERF and B3 domain-containing protein Os01g0140700 isoform X2
SwissprotQ9AWS71e-116Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A0Q3I9W40.0A0A0Q3I9W4_BRADI; Uncharacterized protein
TrEMBLA0A0Q3QMD50.0A0A0Q3QMD5_BRADI; Uncharacterized protein
STRINGBRADI2G02710.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-91RAV family protein