PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G388100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family RAV
Protein Properties Length: 371aa    MW: 39667.6 Da    PI: 10.2916
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G388100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.52.5e-1152100155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s++kGV   + +grW A+I++      r  r++lg+f  +  Aa+a++ a+++++g
  Brast01G388100.1.p  52 SRFKGVVPQP-NGRWGAQIYE------RhSRVWLGTFPDEPSAARAYDVAALRYRG 100
                         689***9788.8*********......44**********66*************98 PP
2B390.61.2e-28169283190
                         EEEE-..-HHHHTT-EE--HHH.HTT........................---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TT CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........................ggkke...esktltledesgrsWevkliyrkksgryvltkG 64 
                         f+k+ tpsdv+k++rlv+pk++ae+h                        +       +++ l +ed +g++W+++++y+++s++yvltkG
  Brast01G388100.1.p 169 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrrasqqdppppepektkttpS---GsgnKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKG 256
                         89*****************************99998888777766665553...0444999****************************** PP

                         HHHHHHHHT--TT-EEEEEE-SS.SEE CS
                  B3  65 WkeFvkangLkegDfvvFkldgr.sef 90 
                         W++Fv+++gL +gD +vF+ ++   e+
  Brast01G388100.1.p 257 WSRFVREKGLGAGDAIVFSCSSAyGEK 283
                         ******************977654444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-652100IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-1452106IPR016177DNA-binding domain
PROSITE profilePS5103219.62553108IPR001471AP2/ERF domain
SMARTSM003802.1E-2053114IPR001471AP2/ERF domain
CDDcd000182.46E-1853106No hitNo description
Gene3DG3DSA:3.30.730.102.1E-1753106IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.7E-36165292IPR015300DNA-binding pseudobarrel domain
CDDcd100174.90E-26168274No hitNo description
SuperFamilySSF1019366.15E-28168291IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-26169286IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464169291IPR003340B3 DNA binding domain
SMARTSM010193.6E-20169292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGAELEILSS TATEYSSAAS TATTESGAGR VPTVAALPAV TSRPATSSSS SSRFKGVVPQ  60
PNGRWGAQIY ERHSRVWLGT FPDEPSAARA YDVAALRYRG RDAATNSAAA SVSGAELAFL  120
AAHSKAEIVD MLRKHTYADE LRQGLLRGHA GHGAGARVRT PAWAREVLFE KAVTPSDVGK  180
LNRLVVPKQH AEKHFPLKRR ASQQDPPPPE PEKTKTTPSG SGNKGVLLNF EDGEGKVWRF  240
RYSYWNSSQS YVLTKGWSRF VREKGLGAGD AIVFSCSSAY GEKQFFIDCK KNGKLVSMPT  300
SASRCASATK EEAPKGGEEE GRVVRLFGVD IGAGKKRSAA AEQQGGGMKR QCVPAHRQQQ  360
SPALGAFVCL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4316629011115DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G388100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565321.10.0AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9AWS01e-121Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLI1HBV40.0I1HBV4_BRADI; Uncharacterized protein
STRINGBRADI2G02720.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-93related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]