PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G380100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 360aa MW: 39478.1 Da PI: 8.5461 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.8 | 3e-55 | 18 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+ +yL++kv+++++ + ++i +vd++k+ePw+Lp+ k++a + kewyf+++rd+ky+tg+r+nrat++gyWkatg Brast01G380100.1.p 18 LPPGFRFHPTDEELIIFYLNPKVSNRSFCT-RAIGDVDMNKCEPWELPAkaKMTAgnDMKEWYFYCHRDRKYPTGHRTNRATQAGYWKATG 107 79*************************988.89**************9535333333666******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kdke+++ + l+g+kktLvfykgrap+gekt+Wvmheyr+ Brast01G380100.1.p 108 KDKEIFRPPSVLIGMKKTLVFYKGRAPRGEKTNWVMHEYRM 148 ***************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-61 | 9 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.036 | 18 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-28 | 19 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MGDMQQQQQH LQQGQLDLPP GFRFHPTDEE LIIFYLNPKV SNRSFCTRAI GDVDMNKCEP 60 WELPAKAKMT AGNDMKEWYF YCHRDRKYPT GHRTNRATQA GYWKATGKDK EIFRPPSVLI 120 GMKKTLVFYK GRAPRGEKTN WVMHEYRMES SSNNNNENKV LSFLPTAKVT NPSSLKDEWV 180 VCRIFHKTTG IKKLVVPSYP MGPVAMGDQQ QGFGSSTAAC IQTQLQPPPM AMGCMDPSAL 240 YGTTGAGASS SYQLPPPMAM AMGNAPEPAP ALPMNGLFFG TQLQAPQPPA PMSFYQQHMQ 300 LQMGHAGDQG FIASGPSSMV SQSQDDAAGV SNAAAATEIS SVEMAGGIDG LGMWKFPKY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-50 | 15 | 193 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-50 | 15 | 193 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-50 | 15 | 193 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-50 | 15 | 193 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-50 | 15 | 193 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-50 | 15 | 193 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G380100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565350.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
Swissprot | Q9FLR3 | 4e-76 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A0Q3FU07 | 0.0 | A0A0Q3FU07_BRADI; Uncharacterized protein | ||||
STRING | Traes_7AL_38B48B7B2.2 | 1e-103 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.2 | 1e-74 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G380100.1.p |
Publications ? help Back to Top | |||
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