PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G354500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 275aa    MW: 28799.4 Da    PI: 10.4996
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G354500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.8e-16116160347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  Brast01G354500.1.p 116 PWTEEEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 160
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.581318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.669109165IPR017930Myb domain
SuperFamilySSF466891.94E-18110164IPR009057Homeodomain-like
TIGRFAMsTIGR015577.8E-19112164IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.4E-12113159IPR009057Homeodomain-like
SMARTSM007173.6E-12113163IPR001005SANT/Myb domain
PfamPF002496.3E-13116160IPR001005SANT/Myb domain
CDDcd001671.17E-10116161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MARKCSSCGH NGHNSRTCSG HRGLQESGGL RLFGVQLHVG AAAAASPLKK SFSMECLPSS  60
SSGPAYYAAA VAASNSASSS SSSLVSVEES GEKMGHGGYL SDGLMGRAQE RKKGVPWTEE  120
EHRRFLAGLE KLGKGDWRGI SRHFVTTRTP TQVASHAQKY FLRQGGLAHK KRRSSLFDVV  180
ENGGTTTLKV DEASSVVSVE GLGLFPALSL GGAAPSAGHH APKKPPAPFA VANASASPWQ  240
APDLELKIAT AARNAEDRPG PPRRTPFFGQ IRVT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G354500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564752.11e-154transcription factor MYBS3
SwissprotQ7XC579e-49MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLI1HCW61e-152I1HCW6_BRADI; Uncharacterized protein
STRINGBRADI2G05760.11e-153(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.13e-51MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]