PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G353800.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 911aa    MW: 101927 Da    PI: 7.7518
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G353800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.5e-094680339
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                         W+++E +++++a +++G++ Wk++++ +g g+++ +
  Brast01G353800.2.p 46 EWSKDELLRFYEAYRLHGKN-WKKVSAAVG-GKSADM 80
                        7*****************99.*********.*99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.07E-94289IPR009057Homeodomain-like
PROSITE profilePS5129310.5134299IPR017884SANT domain
SMARTSM007170.00114391IPR001005SANT/Myb domain
PfamPF002491.6E-74681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.600.0014682IPR009057Homeodomain-like
CDDcd001674.17E-54681No hitNo description
PfamPF065846.5E-30524624IPR033471DIRP domain
SMARTSM011353.2E-34524625IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 911 aa     Download sequence    Send to blast
MGPAKGSRTI SKITIKGFDN RQHNEDPTSS SKVKLKKRKM SDLGPEWSKD ELLRFYEAYR  60
LHGKNWKKVS AAVGGKSADM VEALYSVHRT FLSLPERDGT AMGFITLVTG HHNVLNESPH  120
NKESDQKVKA SGKARRRGDA AEQKENAAPR RQHDYQDMRV CGFSFAFKKR YFGELVRYIR  180
RNPVAKRTPR VPVMVPSDIN ATDNCTPQIK NPLTKKANGE ISNDGNFFKM NDCSPDGSSV  240
ITEANKVVQG QTFLEMKGSG GTDISQTHQY LKKRRIEQSI DKDQFSKVEH VTTIVAEEGQ  300
NIADYQSQLF SPDEMMVLDV LESLLTVPSK MPQPKTNIPS GTLGTNISAS SHRTDEEPSP  360
VDQSKEGKQV SESSASKARK KRRKKLLDEE VLSEEQSNSG NTSVLPEAPQ VLAEEQSNSG  420
NTSVLPEAPH VDTTKQPALN SHFERGAIDL PVSTANTSAE VSPDVRMEID PEINMSRKRK  480
RKYKMQSRTK YASCNEGADD LQARKMLHCL SSESLRRWCT YEWFYSAVDY PWFMNNEFVN  540
YMNFANLSHL SRLTRSEWST IRSSLGKPRR FSGHFLAVEK EKLEDYRENV RKYYAELSDD  600
LQDSLPTDLA RPFSVGQHVI VRHPNSRELC DGKVVRMERD SYKVQFDRPD LGVALVKDTD  660
CMPVNWLDNL PDDLKKRRSL SNNAGREVDI EHIPEPAPKG FGHIIPRFSV SEPSRSPHIE  720
SDERLKAESA VGREMLPSKS TVSRYAPPAL QSVQSLDDTL QSRGRSSNSR GHNDELDSYI  780
TVFIDNSLSQ AKQMVGEAIQ AISENGNEER TCISNQATHC SLESEAFLHD AQLPSDLILK  840
CVATVLAIKD LSACRYPPAN VAGVLEHAFL MLHPSCSENL TIYNEIGSCI SVIKHQILGL  900
VPTISDNGSS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1378384RKKRRKK
2378385RKKRRKKL
3379383KKRRK
4379384KKRRKK
5476481RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G353800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230576.10.0protein ALWAYS EARLY 3 isoform X1
RefseqXP_010230577.10.0protein ALWAYS EARLY 3 isoform X1
TrEMBLA0A0Q3QNV10.0A0A0Q3QNV1_BRADI; Uncharacterized protein
STRINGBRADI2G05824.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.25e-64DNA binding