PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G352200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 457aa    MW: 49344 Da    PI: 6.3946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G352200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.9e-12239283554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h + Er+RR+++N++f+ L+++lP+       K +K +iL  A eY++sL
  Brast01G352200.1.p 239 HMISERKRREKLNDSFHALKTVLPPG-----SKKDKTSILITAREYVNSL 283
                         8899********************95.....4999************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-15234302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.833234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.53E-12236287No hitNo description
Gene3DG3DSA:4.10.280.101.6E-15238303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9239283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-11240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDSSSWINGF GNSTTGAGGN RGFMCGYAAG LQCKDGDEQH ELLVSSQMQH HLNQISMQMN  60
MDDEPALYNI PSVVDDVDFF LPSHHASGVL PTSSSTSSSF RSASLSCSPE NSSAQILAAP  120
ATGCLQFPEV SSNVPLMALP YDDHQHQYVN FNFHDDTGAA MAAPGGDGMS TTTPSAFKRY  180
ARHLGPRHRR PKPACGQRMF KTAISVLTKM HTAMRHQSYY YQQAAAAEPL QPSGNQLQHM  240
ISERKRREKL NDSFHALKTV LPPGSKKDKT SILITAREYV NSLKSKVCEL EEKNQALQAK  300
LAQRGSDNTG EDDTTDTKAG EKVEIQIITR AESAEDQEDQ VCTVKIAVIR SECSGNMTNV  360
VLGTLQRLKD EVGEDVTLVA MSSSDVDGEG ETPRASLTMQ LKSASGAQWE EAAVREAVAK  420
AVADALPVSR SQSAETTTAP RRGETGRTRA RSALAN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247ERKRRE
2243248RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G352200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565458.10.0putative transcription factor bHLH041
TrEMBLA0A0Q3JXG20.0A0A0Q3JXG2_BRADI; Uncharacterized protein
STRINGBRADI2G05950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-26bHLH family protein