PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G349400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 887aa    MW: 96462.7 Da    PI: 6.575
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G349400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.4e-1861119357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         k  ++t+eq+e+Le+l++++++ps  +r++L +++     ++++q+kvWFqNrR +ek+
  Brast01G349400.1.p  61 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECavlaAVDTKQIKVWFQNRRCREKQ 119
                         6789*****************************************************97 PP
2START170.21.4e-532084152204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++e+++v+  g  g+
  Brast01G349400.1.p 208 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVSMEPA-KVAEILKDRPLWLRDCRSMEVVNVLPAGsnGT 297
                         789*******************************************************.8888888888********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++l+a ++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h dl+ r++
  Brast01G349400.1.p 298 IELLYMQLYAQTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHLDLEPRSV 388
                         ************************************************999999************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         ++++r+l++s+++ ++k+ +a+l++++
  Brast01G349400.1.p 389 PEVVRPLYESSAIVAQKMSMAALRYLR 415
                         ***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.15956120IPR001356Homeobox domain
SMARTSM003891.8E-1458124IPR001356Homeobox domain
PfamPF000461.1E-1561119IPR001356Homeobox domain
CDDcd000863.80E-1461118No hitNo description
SuperFamilySSF466892.27E-1661122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-1763119IPR009057Homeodomain-like
CDDcd146862.57E-5113152No hitNo description
PROSITE profilePS5084827.078198417IPR002913START domain
CDDcd088752.16E-71202418No hitNo description
Gene3DG3DSA:3.30.530.204.4E-21205412IPR023393START-like domain
SuperFamilySSF559612.06E-34207418No hitNo description
SMARTSM002342.3E-43207417IPR002913START domain
PfamPF018522.4E-51208415IPR002913START domain
PfamPF086702.6E-46742885IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MLCTAVVVVN PDTIRFHRAV CLGICSDRHL FPSGNGLHEI DKRRFHMVTA REMAAAMDAS  60
KYVRYTPEQV EALERLYYEC PKPSSLRRQQ LVRECAVLAA VDTKQIKVWF QNRRCREKQR  120
RESGRLQSLN RKLTAMNKLL MEENDRLQKQ VSSLVYENGY YRQQHTHSAG LATTDTSCES  180
VVTSGGQQQN VVVAPPPRDA SPAGLMSIAE ETLTEFLSKA TGTAVEWVQM PGMKPGPDSI  240
GIIAISHGCA GVAARACGLV SMEPAKVAEI LKDRPLWLRD CRSMEVVNVL PAGSNGTIEL  300
LYMQLYAQTT LAPARDFWLL RYTSILDDGS LVVCERSLSS KQGGPSMPLV QPFIRGEMLP  360
SGFLIRPSDG GGSVIHIVDH LDLEPRSVPE VVRPLYESSA IVAQKMSMAA LRYLRQLAHE  420
DTHSIITGWG RQPAALRALS QKLTRGFNEA LCGLTDDGWS AIESDGVDDV CISVNSSPNK  480
VMSCNATFGD GLPIVSTGVL CAKASMLLQD VSPPSLLQFL HEHRSQWADS TLDAFFASAL  540
KPNFCNLPMS RLGGFSGQVI LPLAHTFDPE EFLEVIKIGN ASNYQDTLMH RDLFLLQMYN  600
GVDENTVGSC SELIFAPIDA SFSDDSPLLP SGFRIIPIDS PLDTSSPNCT LDLASTLEVG  660
TPRGRMTGSG PVNGAGMKAV MTIAFQFAFE SHLQDSVAAM ARQYMRSIIS SVQRIALALS  720
SSRLVSHGSP RLLPPATPEA ATLSRWIVQS YRFHFGAELI KSGDADGGES VLKSLWHHTS  780
AILCCSLKAM PVLTFANQSG LDMLETTLAA LQDMSLEKIL DGHAGKSLIA ELPSIMEQGF  840
ACVQGGVCAS RLGRPAAYEK AVAWKVLDDG GAAHCVCFAF LGWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G349400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3653120.0AK365312.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033F15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565084.10.0homeobox-leucine zipper protein HOX29
RefseqXP_024314171.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0Q3IBF50.0A0A0Q3IBF5_BRADI; Uncharacterized protein
STRINGBRADI2G06210.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein