PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G342900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 624aa    MW: 72003.4 Da    PI: 8.7088
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G342900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.84.1e-1925117191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                         +fYn YA e GFsvrks+ +  + n+e ++r++vC  eg+ree++ k ++ +rr+r+ tr+g +akl++ + k +g+w v+++  e +H+l
  Brast01G342900.1.p  25 EFYNGYALEKGFSVRKSYVEWDEANQELIMRKLVCCHEGSREEKHMKrQDMKRRPRNLTRVGSRAKLVIARVKeTGRWFVKDFLDEPTHPL 115
                         6*****************************************999885788999****************9999****************9 PP

                FAR1  90 ap 91 
                         ap
  Brast01G342900.1.p 116 AP 117
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1725117IPR004330FAR1 DNA binding domain
PfamPF105511.1E-8210244IPR018289MULE transposase domain
PfamPF044349.2E-4434468IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.423434473IPR007527Zinc finger, SWIM-type
SMARTSM005750.0058448475IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MADESVDEYH KIVEKTFGSE DDGFEFYNGY ALEKGFSVRK SYVEWDEANQ ELIMRKLVCC  60
HEGSREEKHM KRQDMKRRPR NLTRVGSRAK LVIARVKETG RWFVKDFLDE PTHPLAPRDL  120
ASLLRSHRRI NDEQEADIVE MEISGLRKHK IMDILVMRYG GYDEVGCTTR DIYNFCHLYK  180
QETIVVGDAQ TGLFWADSQS RLDYEVFGDV VVFDSTYRTN KYNLPFVPFV GLNHHYSTVV  240
FGCGKHPITV ITDGDLAMQR ANRVIWPDTI HRLCIWHIQQ NIVRHLDDDL HEKKWMDFLE  300
RNKVTSEESW LHQMYQMRKL WCAPYLVGHC FLGLSSNQRS ESLNSVLHTL MRCLSTRRLN  360
ESILDIVALQ SVPFTEVDAS SLEKHAALVF TPAVFALVRW STNXVSNCTM SEIVDADNLS  420
TFVVAKKDRR DKKFQVQCEV KEGSLDRISC SCRKLECLGT PCSHIIYVLG ILQEDRLPKC  480
CVPTRWTMSA KAAFPKTRKN NMYDYSVSLK RYRELRNLSH VACFLASQSV EAYERLKLVL  540
NVQAHSKESS TGHKEYMRYG PMLPQTTQLD SGDLEKVLDP VHVQGRGAPK KRLKPRKRKR  600
SKVKCGYCQQ EVTIGVNAPS GKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1591602RLKPRKRKRSKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G342900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314638.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-68FAR1-related sequence 5