PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G340600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 468aa    MW: 48696 Da    PI: 6.9753
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G340600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.61.6e-3286176297
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec..e 74 
                         +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+ l  +                +  +as++  +
  Brast01G340600.1.p  86 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDSLDVLpawqptnvaapgnagaG--AASSThpD 174
                         79**************************************************************55555544444444221..22222111 PP

                 TCP  75 aesssssasnsssgkaaksaaks 97 
                                               s
  Brast01G340600.1.p 175 ---------------------DS 176
                         .....................11 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-3086151IPR005333Transcription factor, TCP
PROSITE profilePS5136932.80188146IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGDAGGQPHH HHGLQTQLLS FGGVHHMHQF TAQAMQTQPP AGAASQPRSR GRGGGEIATP  60
ATRVRGGGGG GGEIVAVQGG HIVRSTGRKD RHSKVCTARG PRDRRVRLSA HTAIQFYDVQ  120
DRLGYDRPSK AVDWLIKNAK DAIDSLDVLP AWQPTNVAAP GNAGAGAASS THPDDSPENS  180
DDQAQAITIA AHTSFDFASG GGGGTGGGIS FLPPSLDSDS IADTIKSFFP MGGTGSGGEP  240
SSSTVAAAHS SAAMGFQSYT PDLLSRTGSQ SQELRLSLQP LPDPMFQHHD HGHQHQQHEQ  300
QQHRSHGHGG NGTAPQQALF PGAANYSSFG GGAMWATEQP QSQRIVPWSV PDPGGGGGGS  360
YLFNVSQQAA HMQAALSGQS QFFFQRGPLQ SSNQPSDRGW PDSVEADSNP MQQQHHQGAM  420
NPSISAIGFA PGVSFSGFRI PARIQGDEEH NGGNGDKPPS VSSASHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2093146154Putative transcription factor PCF6
5zkt_B5e-2093146154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G340600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5707540.0JX570754.1 Agrostis stolonifera PCF5 (PCF5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753598.10.0transcription factor PCF5
SwissprotA2WM141e-160PCF5_ORYSI; Transcription factor PCF5
SwissprotQ8LT071e-162PCF5_ORYSJ; Transcription factor PCF5
TrEMBLA0A0Q3ISB00.0A0A0Q3ISB0_BRADI; Uncharacterized protein
STRINGBRADI2G06890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-69TCP family protein