PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G338300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 27376.8 Da PI: 9.9398 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.8 | 9.7e-14 | 65 | 111 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riNs +++Lr+++P K++Ka+ L +++ ++k+L Brast01G338300.1.p 65 RSHSEAERRRRERINSHLATLRSMVPCT-----DKMDKAALLAEVIAHVKKL 111 68*************************7.....6****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.796 | 62 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.03E-4 | 65 | 113 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.9E-14 | 65 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-11 | 65 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-14 | 66 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-12 | 68 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MNSGGLYDGF YGGFGHGGHG FSQLGASSSS ALLDGGAREL DAATDVPKRK GGEGEPEEKA 60 AMALRSHSEA ERRRRERINS HLATLRSMVP CTDKMDKAAL LAEVIAHVKK LKAHAARVGT 120 RCPVPSGADE VTVELLHHPS TPHAATTSSS NNSGGLLVKA TLSCADGCAD HFADVRRALR 180 PLAPRLLRSE VTTLGGRVRI SFLMAREGGV TADSVRRALG SVLDSGDRSA AAAFDFAPRD 240 SLLKSKRRRV SAFESCSSSS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 75 | ERRRRE |
2 | 245 | 249 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G338300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068593 | 2e-62 | AK068593.1 Oryza sativa Japonica Group cDNA clone:J013152L23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565499.1 | 1e-130 | transcription factor bHLH30 | ||||
TrEMBL | I1HDA8 | 1e-129 | I1HDA8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G07050.1 | 1e-129 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11011 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 6e-21 | basic helix-loop-helix 32 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G338300.1.p |