PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G330800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 985aa MW: 107652 Da PI: 4.9971 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.7 | 6.4e-19 | 50 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l Brast01G330800.2.p 50 KGNWTPEEDDILSRAVQTYNGKNWKKIAECFP-DRTDVQCLHRWQKVL 96 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 61.8 | 1.4e-19 | 102 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++vd v+++G++ W+tIa+ ++ gR +kqc++rw+++l Brast01G330800.2.p 102 KGPWSKEEDEIIVDMVRRYGPKKWSTIAQALP-GRIGKQCRERWHNHL 148 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 49.7 | 8.3e-16 | 154 | 196 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ +l++a++++G++ W+ + ++ gRt++++k++w+ Brast01G330800.2.p 154 KEAWTQEEEIILIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 196 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.437 | 45 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-16 | 46 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-17 | 49 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-17 | 50 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-25 | 52 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.91E-15 | 52 | 96 | No hit | No description |
PROSITE profile | PS51294 | 31.617 | 97 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.11E-31 | 99 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-18 | 101 | 150 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-17 | 102 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.34E-15 | 104 | 148 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 109 | 151 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 152 | 203 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.643 | 153 | 203 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-15 | 153 | 201 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-14 | 154 | 197 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.45E-11 | 156 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 985 aa Download sequence Send to blast |
MTSDKGKASK KAGEASGLPS SSHEGKVSNE PQRQRSLNGR TTGPTRRSTK GNWTPEEDDI 60 LSRAVQTYNG KNWKKIAECF PDRTDVQCLH RWQKVLNPEL IKGPWSKEED EIIVDMVRRY 120 GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP GINKEAWTQE EEIILIHAHR MYGNKWAELT 180 KFLPGRTDNS IKNHWNSSVK KKIDSYTSSG LLAQVSCLPL IEYPVHCNSS PAMTRQNSGE 240 SGSNAVRELD DSSACIQSSL AMVSSSQNAN VALVCDLQVN EDPSKIEAQD SQSSMCQEAC 300 YPSTEGVASA LSDVHYHVSS SNFDPDKNLQ QEFAQSMNSQ MDIDETPSTS LFADNQTICS 360 TVSNERSLVP YDTAPDMPIS MLPSVSGAEQ NLHFMSEADF GSPNCLKSEL WQDISLQSLL 420 SGPDLVDADS FSTVNHLSDA YSSKGDSNVL APPNPLHTSS MMETAYVQGS LMSVPQSLVC 480 SGLPDAPDDR SEPRDMPVSQ SEAVIHRHDS FGDLEHPANP SSSDGRHGAS AIIEGLPEYG 540 DQQLPDAEEP ATSIANEPSL PQSEAAPDEK QVKGALFYEP PRFPSMDVPF VSCDLVTSGD 600 LQEYSPLGIR QLMRSTMNVS TPLRLWGSPS QDESPGVLLK SAAKSFICTP SILKKRPRDF 660 LSPTPDKRSM KKCGTEKDCG VLGAPSISAE TCCLNATQDE AIVTESVFCT EQPSASFRPL 720 EKKLEFSDEN EENLGETSER KKDGRNAGTN HPTDEQARVE QCSTTNMVNN NDDPPRNLQP 780 AGFLEDKGND LPDHGSNAMD RKINTNPEAS SACKERACAK SKSTELIAEK SSPCINTDYG 840 YVNILADTPG VKRGLESPSA WKSPWFTNMQ YKGSYFVSPA DITYDALGLM KRINVQSAAA 900 LADAREVLSS GKQRDNSKEN KENIDAEKET GTCKSQTKIM AEARVLDFNE CATPVRTASN 960 SVGSSLARSL SSPIPSSHPV KHFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-68 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-68 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G330800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010230653.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
TrEMBL | A0A0Q3FVJ9 | 0.0 | A0A0Q3FVJ9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G07677.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 1e-105 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G330800.2.p |