PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G327400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 548aa MW: 61059.6 Da PI: 7.3537 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.5 | 5.1e-18 | 205 | 295 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k +++s+v + +l lp +f++++ k ++ ++lede+gr ++ k+ +++++ l++GW++F+ +g+k+gD+vvF+l+++++f Brast01G327400.1.p 205 FIKYMLQSHVIQGFWLGLPCDFCNKYLPK--HDTAIVLEDENGRNYDTKY--LGTKQG--LSAGWRGFAINHGIKVGDIVVFQLVSSTKF- 288 8999*******************999433..5568***************..888877..9**********************9987777. PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v ++r+ Brast01G327400.1.p 289 -KVYILRA 295 .9998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-21 | 199 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-25 | 200 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-24 | 203 | 294 | No hit | No description |
PROSITE profile | PS50863 | 14.043 | 205 | 296 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-16 | 205 | 295 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-19 | 205 | 296 | IPR003340 | B3 DNA binding domain |
Pfam | PF05266 | 7.3E-8 | 421 | 534 | IPR007930 | Protein of unknown function DUF724 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 548 aa Download sequence Send to blast |
MAVDQSLKTK RGRPAGAGSP AAKSMSKMEQ KMALVHQRLA LLDSESDKDA DVVPIVKLDE 60 ELATVVDQQS TRIDCDNTDS EEEYVPLRIV RPERGDSAQK RLPCLSQTHD GHNINTATNK 120 RGRPASSQSA KSNKEQKKTL VKPKIALIGS VSTNSSASDK DDHLVPMVSD VNGEKTFASV 180 QGNCGSAMER AKEVQVKLPA EHPSFIKYML QSHVIQGFWL GLPCDFCNKY LPKHDTAIVL 240 EDENGRNYDT KYLGTKQGLS AGWRGFAINH GIKVGDIVVF QLVSSTKFKV YILRANNCST 300 TDGALGLLCL DAGKEKMRKE GSSNPVQSKE DPKLTRVSSK VIHSDSSNLV SESIDGIQFS 360 ESDIDFDNVE SFSNFNITVD SLVIDCKFPD HLRKTYYELC SAQKSFLHKN LLKQINLTLV 420 VGVIMETINI AEGIRALKVH ASSREDFVVW KKTLESFELL GMNVAFLLKR MDHLLSLPDR 480 SRDLAECKEY KEIKLEQAHA KEKIQDLESK MSNMKDTLKK MDVEMEEMES SAKRRDEMVQ 540 RLATAPW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G327400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014754264.1 | 0.0 | B3 domain-containing protein Os01g0234100 isoform X2 | ||||
Swissprot | Q0JP99 | 0.0 | Y1341_ORYSJ; B3 domain-containing protein Os01g0234100 | ||||
TrEMBL | A0A0Q3IC21 | 0.0 | A0A0Q3IC21_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G07980.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6080 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 5e-38 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast01G327400.1.p |
Publications ? help Back to Top | |||
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