PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G324900.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 659aa MW: 72443.9 Da PI: 6.3968

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G324900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	592	643	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Brast01G324900.2.p 592 AEKTISLEVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 643 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.63	582	658	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-26	595	643	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence Send to blast
MDIDPSSASH ADGGAGDLWP FDSLTTSLFF SSVSSSPPLS TLPVASSSWL APPSPLWLFD 60 DRQLLPIEVG PAPVSAAAEN AAVAAAAAAA AEDVQRARSG NSDTASKRVE RLSNNKWQFH 120 LSLHDDSTNS SCLFKEKLTH ALRYFKESTD QHLLVQVWAP VKSGDRYVLT TSGQPFVLDH 180 QSIGLLQYRA VSMMYMFSID GDNAGELGLP GRVYKQKVPE WTPNVQYYSS TEYPRLNHAI 240 SYNVHGTVAL PVFDPSVQSC IAVVELIMTS KKINYADEVD KVCKALEAVN LKSTEILDHP 300 NVQICNEGRQ SALVEILEIL TVVCEEHKLP LAQTWVPCKY RSVLAHGGGV KKSCLSFDGS 360 CMGEVCMSTS DVAFHVIDAH MWGFRDACVE HHLQKGQGVS GKAFIYHRPC FSKDISQFCK 420 VEYPLVHYAR MFGLAGCFAV CLQSPYTGDD YYILEFFLPP SCRDEDDQNA LLESILGLIN 480 QCLRNLKVAG NGASNEASLQ LSNVLIVENE DFKTNGHFEN SEGCFRESPE DDTNGVHEFD 540 KGNNKVSEGH LLADDNSQNN GTSVSRPNGS GASDSSLLHK SNKQPERRRG KAEKTISLEV 600 LQQYFSGSLK NAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVLFLLFLL VLHQILSI*

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence Send to blast

MDIDPSSASH ADGGAGDLWP FDSLTTSLFF SSVSSSPPLS TLPVASSSWL APPSPLWLFD  60
DRQLLPIEVG PAPVSAAAEN AAVAAAAAAA AEDVQRARSG NSDTASKRVE RLSNNKWQFH  120
LSLHDDSTNS SCLFKEKLTH ALRYFKESTD QHLLVQVWAP VKSGDRYVLT TSGQPFVLDH  180
QSIGLLQYRA VSMMYMFSID GDNAGELGLP GRVYKQKVPE WTPNVQYYSS TEYPRLNHAI  240
SYNVHGTVAL PVFDPSVQSC IAVVELIMTS KKINYADEVD KVCKALEAVN LKSTEILDHP  300
NVQICNEGRQ SALVEILEIL TVVCEEHKLP LAQTWVPCKY RSVLAHGGGV KKSCLSFDGS  360
CMGEVCMSTS DVAFHVIDAH MWGFRDACVE HHLQKGQGVS GKAFIYHRPC FSKDISQFCK  420
VEYPLVHYAR MFGLAGCFAV CLQSPYTGDD YYILEFFLPP SCRDEDDQNA LLESILGLIN  480
QCLRNLKVAG NGASNEASLQ LSNVLIVENE DFKTNGHFEN SEGCFRESPE DDTNGVHEFD  540
KGNNKVSEGH LLADDNSQNN GTSVSRPNGS GASDSSLLHK SNKQPERRRG KAEKTISLEV  600
LQQYFSGSLK NAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVLFLLFLL VLHQILSI*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G324900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565547.1	0.0	protein NLP3
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A0Q3JYC7	0.0	A0A0Q3JYC7_BRADI; Uncharacterized protein
STRING	BRADI2G08177.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Brast01G324900.2.p