PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G321200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 468aa    MW: 49918.3 Da    PI: 8.9463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G321200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-066789123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++Cgk F r  nL+ H r H
  Brast01G321200.1.p 67 FVCEICGKGFQRDQNLQLHRRGH 89
                        89*******************88 PP
2zf-C2H210.90.0014143165123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C k +  +s+ k H +t+
  Brast01G321200.1.p 143 WKCDKCAKKYAVQSDWKAHAKTC 165
                         58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.52E-76689No hitNo description
SMARTSM003550.0126789IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-56789IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6146789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355100108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.52E-7138163No hitNo description
SMARTSM00355220143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MASGEAMSSP FAPLTNQQLH QQQTSSQDQE HPPPPPAKKK RNLPGTPDPE AEVIALSPRT  60
LMATNRFVCE ICGKGFQRDQ NLQLHRRGHN LPWKLRQRGK DQPRKRVYVC PEKGCVHHNP  120
SRALGDLTGI KKHFCRKHGE KKWKCDKCAK KYAVQSDWKA HAKTCGTREY RCDCGTLFSR  180
RDSFITHRAF CDALAEETAR LQQTAAASPC GGQSYLFAGS AAGALNVRPD MMLPPAPGQM  240
MPGHGALSLW GGSALPSSLG QNIAGGAPMP MPMPMPAPQM YADLFAPSSG GAAQFDMAQL  300
NWLYGNGNGG GKQLSSSNAS ELTTTNSSRE ADSSAPSVFS GQHHAKPAAA PTDMSATALL  360
QKAAQIGAVT SNTNSMPLVE GLFEPVKSTR APVEETALFG ASHQQHSANN NGSSAMSELT  420
AANTGYDVFS AVRHGGGLKD AVGREETRDF LGVGMQALCS SSIHGWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-36139201365Zinc finger protein JACKDAW
5b3h_F8e-36139201365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G321200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074681e-168AK107468.1 Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753924.10.0zinc finger protein NUTCRACKER
SwissprotQ9ZWA61e-129IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A0Q3JYH40.0A0A0Q3JYH4_BRADI; Uncharacterized protein
STRINGBRADI2G08460.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-116C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]