PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G317300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 403aa    MW: 42587.5 Da    PI: 4.779
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G317300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573963.7e-3086185297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqki 88 
                         lfqrlw++e e+++L+G+++f++++g+   +++ d+  fye +++++sf++s++ql+eK+rrLKkK++ + ++ +++g  ++f+++h+  i
  Brast01G317300.1.p  86 LFQRLWTDEEELLILRGFLEFTSRRGTafASHQyDTVPFYEEIRHKLSFEFSRNQLIEKLRRLKKKYRVCANRmVAQGGAFAFKSAHEGAI 176
                         79************************99877778**************************************9999*************** PP

              DUF573  89 felskkiWg 97 
                         +++++ iW+
  Brast01G317300.1.p 177 YDVARHIWH 185
                         ********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-2687185IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MADDPASAAA SRSSSSADED GEDTDSDASN NSDPAAPQDP PVLPDNSAPT PAPEPDGPIP  60
PPPPLPPPSQ SQGASGTAAT EDSRRLFQRL WTDEEELLIL RGFLEFTSRR GTAFASHQYD  120
TVPFYEEIRH KLSFEFSRNQ LIEKLRRLKK KYRVCANRMV AQGGAFAFKS AHEGAIYDVA  180
RHIWHPSFKR NGGDASDEDD VNPAEAAAAA AAAAAAATAL PVAVEDGGGG SASTPTPRGR  240
GGRRGRRRTA QEMEAPTMPA TPALMLTNIA QETAAVTLEN SVPMIAPPPR VLAHVPAPVR  300
ANGLTEEDVR SILSPLLKEL ISSVAVAGQS GLGLGLGIGF GGVGSADILG PRFGPSGLNP  360
GVPSEEKWRQ QQILELEVYL KRIELVREQV AMALDELRSS ES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G317300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566363.10.0probable transcription factor At5g28040
TrEMBLI1HDW80.0I1HDW8_BRADI; Uncharacterized protein
STRINGBRADI2G08810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-33DNA-binding storekeeper protein-related transcriptional regulator