PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G293000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 330aa MW: 36793.3 Da PI: 7.733

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G293000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	45	85	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Brast01G293000.1.p 45 KTMRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 85 7789************************9877777766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.6E-8	41	104	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.496	43	87	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-7	45	85	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.87E-7	45	88	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.3E-8	46	90	No hit	No description
PROSITE pattern	PS00036	0	48	63	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.7E-34	127	202	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MAEASPRTDT STDDTDENHM LEPGQVALVV SDSSDRSREK NGDQKTMRRL AQNREAARKS 60 RLRKKAYVQQ LENSRLKLTQ LEQELQRARQ QGIFISSSAD QSHSTSGNGA IAFDVEYSRW 120 LEEHNRQVNE LRAAVNAHAS DNDLHSVVEK IMSHYEEIYK QKGNAAKADV FHVLSGMWKT 180 PAERCFLWLG GFRPSEVLKL LSTQLEPLTE LQLSGICNLQ HSSQQAEDAL SQGMEALQQS 240 LAETLAGSIG TSGSTGNVAN YMGQMAMAMG KLGTLENFLR QADNLRQQTL QQMQRILTTR 300 QSARALLVIS DYSSRLRALS SLWLARPKE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G293000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251460	0.0	AK251460.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf125e16, mRNA sequence.
GenBank	AK357239	0.0	AK357239.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1048N17.
GenBank	AK359391	0.0	AK359391.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1095N07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010230791.1	0.0	transcription factor HBP-1b(c38)
Swissprot	P23923	0.0	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBL	I1HEK9	0.0	I1HEK9_BRADI; Uncharacterized protein
STRING	BRADI2G10830.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-147	TGACG motif-binding factor 6

Link Out ? help Back to Top
Phytozome	Brast01G293000.1.p

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143]