PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G287300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 368aa    MW: 39735.7 Da    PI: 6.8002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G287300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.7e-07173215754
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         + E++RR r+ +++  L  l+P++     +K + a++   A+eYI++L
  Brast01G287300.1.p 173 KKEKQRRLRLSEKYTALMLLIPNR-----TKEDRATVISDAIEYIQEL 215
                         57*********************9.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.925166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-4172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-5173215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-9174232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-6175215No hitNo description
Gene3DG3DSA:4.10.280.102.1E-7175222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MYHPQCELLM PHESLDMDAV VGQSHLAASG VSAIPAELNF HLLHSFVDTA ASAAVSPQPP  60
TVDYFFPGTD PPPAAVQFEQ LAATSHHAMS MLRDYYGQQG AQQYSAETYL RGSAPRTTTG  120
SSSLVFGPAN DDESAAYMVG PFESSPTPRA AGGGRKRNRG SRAGGPAHGG VEKKEKQRRL  180
RLSEKYTALM LLIPNRTKED RATVISDAIE YIQELGRTVE ELTLLVGKKR RRNGGEHHHH  240
QGDVVDAAPA LAAGEQLALA GAESSEGEVA PLAPIRSTYI QRKSKETFVD VRIVEDEVNI  300
KLTKRRRDGC LAAASRALDD LRLDLVHLSG GKIGDCHIYM FNTKIHQGSP VFASAVASKL  360
IEVVDEY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159GRKRNRG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G287300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068501e-109AK106850.1 Oryza sativa Japonica Group cDNA clone:002-118-A11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567568.10.0transcription factor TIP2
SwissprotQ5JNS01e-168TIP2_ORYSJ; Transcription factor TIP2
TrEMBLI1HEQ80.0I1HEQ8_BRADI; Uncharacterized protein
STRINGBRADI2G11260.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.17e-36bHLH family protein