PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G285400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 278aa    MW: 31155.7 Da    PI: 7.167
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G285400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-162370148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd ll+ ++k +G g+W+  ar  g++Rt+k+c++rw++yl
  Brast01G285400.1.p 23 RGPWTVEEDVLLAGYIKAHGEGRWNELARAAGLRRTGKSCRLRWLNYL 70
                        89********************************************97 PP
2Myb_DNA-binding49.21.2e-1576119146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg ++++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Brast01G285400.1.p  76 RGDFSPQEQLLILELHFRWGNR-WSRIAQELP-GRTDNEVKNYWRT 119
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.81874IPR017930Myb domain
SuperFamilySSF466893.22E-2921117IPR009057Homeodomain-like
SMARTSM007172.3E-132272IPR001005SANT/Myb domain
PfamPF002498.6E-152370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-212477IPR009057Homeodomain-like
CDDcd001671.30E-92570No hitNo description
SMARTSM007176.0E-1475123IPR001005SANT/Myb domain
PROSITE profilePS5129416.875125IPR017930Myb domain
PfamPF002496.3E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2278124IPR009057Homeodomain-like
CDDcd001674.16E-1079119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSTGMGALWT SAGSEDEAAE LRRGPWTVEE DVLLAGYIKA HGEGRWNELA RAAGLRRTGK  60
SCRLRWLNYL RPDVRRGDFS PQEQLLILEL HFRWGNRWSR IAQELPGRTD NEVKNYWRTR  120
VQKHAKQLRC DVNSKQFQDV MRHLWMPRLA ERIQAAATTS STSSEHAAPT LHRPPMCQTN  180
SSSLVGQMTW SAGRPSSGAL FPSNQVNMAA PGCSADWSAG SASARSDDMF EGSWSELLAR  240
ACDDDGADSL VFPDFGLGES RDNSWSLEDI WTLRHQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-242011724120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G285400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5644281e-140FN564428.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0091b.
GenBankHG6703061e-140HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565694.21e-157transcription factor MYB2
SwissprotQ10MB45e-83MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A0Q3FX811e-155A0A0Q3FX81_BRADI; Uncharacterized protein
STRINGBRADI2G11430.11e-153(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-80myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]