PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G282800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 393aa    MW: 42579.1 Da    PI: 5.0873
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G282800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rgrWT eEd++l++++k++G g+W++ ++  g+ R++k+c++rw +yl
  Brast01G282800.1.p 14 RGRWTREEDDILAKYIKEHGEGSWRSMPKNAGLLRCGKSCRLRWINYL 61
                        8*******************************99************97 PP
2Myb_DNA-binding54.13.7e-1767112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ ++eE+e ++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Brast01G282800.1.p  67 RGNISEEEEEMIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                         7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.741961IPR017930Myb domain
SuperFamilySSF466891.46E-2811108IPR009057Homeodomain-like
SMARTSM007172.8E-131363IPR001005SANT/Myb domain
PfamPF002497.6E-161461IPR001005SANT/Myb domain
CDDcd001676.76E-111661No hitNo description
PROSITE profilePS5129425.24962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2565115IPR009057Homeodomain-like
SMARTSM007174.4E-1766114IPR001005SANT/Myb domain
PfamPF002492.4E-1567112IPR001005SANT/Myb domain
CDDcd001671.76E-877112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTRE EDDILAKYIK EHGEGSWRSM PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SEEEEEMIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRSHDFP  120
KGGDGVVVNV VVNVDLSKLP GGGKRRGGRV GRATATTAKG KRKAKGKKAG KLKDKVAEMD  180
HHHHHKEDAT DEEATNSIST PSSCHSGSAP RGEEQAQASA SGVTSDGFDE APLGLCEETV  240
SGLKAQASPH TEVGQDVSGN EGQSAPEKAV GHEELSSKAV VEQDQHGSCN EGECGTSGPC  300
KVVGREELGD KAMECDHNEC CDKEESEPAG AVGQEVPVDD KAMEWDLVGL DDSLPTDDMW  360
GSLVWDYDDM VISDGGQQEE PVLSDLFFLD NI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23121155107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162168KAKGKKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G282800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0927671e-105FP092767.1 Phyllostachys edulis cDNA clone: bphylf059d01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565704.10.0transcription factor MYB111
TrEMBLI1HEV80.0I1HEV8_BRADI; Uncharacterized protein
STRINGBRADI2G11676.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-71myb domain protein 12