PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G272500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 119aa MW: 13635.2 Da PI: 12.4032 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.8 | 3e-06 | 52 | 101 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC......TTS-STCH.HHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkas...kapskKlsKa.eiLekAveYIksLq 55 rrR+d i+ ++ Lr+l+P as + ++ + s e L + +YI Lq Brast01G272500.1.p 52 RRRVDVIRRKIRALRTLVPRASngeQDRQDRHSRLdELLLHSADYILRLQ 101 99******************998995555555555268999*****9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-6 | 51 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-5 | 52 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MAARAASSCC RVAAARRFLA RKKKALEAGT RKKLAGVAKQ KQGMPRRARS RRRRVDVIRR 60 KIRALRTLVP RASNGEQDRQ DRHSRLDELL LHSADYILRL QMQVRVMQLM VHVLNPKD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G272500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012701703.1 | 1e-22 | uncharacterized protein LOC105914476 | ||||
TrEMBL | I1HF55 | 5e-56 | I1HF55_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G12490.1 | 8e-57 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9111 | 21 | 26 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G272500.1.p |