PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G271500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 391aa MW: 41619.2 Da PI: 5.0532 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.7 | 5.6e-12 | 10 | 52 | 2 | 44 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +i n++ r t++ R +g+ KKAeEL +LC + va++ ++ g Brast01G271500.1.p 10 FIGNTRARAATYASRTKGLRKKAEELATLCSVPVALVCAAAAG 52 799**********************************988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 9.03E-16 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.7E-11 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.432 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-11 | 10 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MPRRKIAMRF IGNTRARAAT YASRTKGLRK KAEELATLCS VPVALVCAAA AGAPPLVWES 60 REGVLDRYRA LPAEVRAQHT HRGYLEADLG KGRAKHARVR QHGLGALADQ DAALLSGMAL 120 HEARELLEAV EAALLATTRR MEALGLPATT NDVDGDLQEL EQFEFPDCLD AAMMLPGVGS 180 SSNPFVDMDA GFHQLQMMPA GHGNYGFPAG QGQMEQQFSW DDRMQRNAEM TVQPAYGFQC 240 TDANYSGAGA VGGGYGQQMQ QPVYGNADHY GWTDLTMWNT DDFSCNAALP PAGCYNSLGS 300 GNGGGGGTAA VPQHSALVAT GGGDYIDAQP LGYAMGNGMG ANFASQQDGY ATHWSAEEFQ 360 RADNTGTSQL AATSTTWTRT SSDQVFNYLQ * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G271500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003565738.1 | 0.0 | uncharacterized protein LOC100843549 | ||||
TrEMBL | A0A0Q3FXQ2 | 0.0 | A0A0Q3FXQ2_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4572 | 29 | 60 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G271500.1.p |