PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G263400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 263aa MW: 29086 Da PI: 7.015

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G263400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00037	230	252	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F ++ ++ H+++H Brast01G263400.1.p 230 YTCELCNMTFFSPQSYGGHMSSH 252 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.5E-5	224	251	No hit	No description
Pfam	PF12874	1.1E-4	230	252	No hit	No description
PROSITE profile	PS50157	9.12	230	257	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	232	252	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MDPTGFLTKD DDAIYCDDEA YISYISPLHE ALRGTTAMPS LDEFLKHNTP MNILPLPTNS 60 IPVVSEIQEN SIFPMNEHSM QPSHMNVALP IPPVMSSSML ATATPKSTTP FEVKFTAPSF 120 TSPIQGSTLR SSDGGTNTRG VLKHPPAFDY PAWFAKEQNT NTIVESSSYK QQNGFAPFVN 180 PTIFHPLWES TQPRMAVQQM KMGGQHEMLQ KVSAPRTSSK MVQPNRSRGY TCELCNMTFF 240 SPQSYGGHMS SHSKANKKFL LD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G263400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11492	6	12

Link Out ? help Back to Top
Phytozome	Brast01G263400.1.p