PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G241100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 447aa    MW: 46640 Da    PI: 6.2649
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G241100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.4e-07323363954
                         HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          r+RR+ri +++  L++l+P  a      K++ a++L +A  Y++ L
  Brast01G241100.1.p 323 ARQRRERISERLRVLQRLVPGgA------KMDTASMLDEAASYLRFL 363
                         69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-11320368No hitNo description
SuperFamilySSF474597.72E-13320375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-10322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-4323363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDHGFCNDMI LSESAWNGGD GAAGDIVNVA DGGGGMTVLE RLVLDEALAA AILELQGIQV  60
PCKAMNMAGG GVEAFFGGMP AAAYSDADGV VVQRQQHHRH QAAMGLPASD YDLAPAPATA  120
RAVTLAATAP APSFANANTT AAAFDAVATK AAATTSQWEE AAGNGSGAKR QRRSSRKRKA  180
AAEPPPCTDE LAKENPLCSL LASTSARSVA DGGGIQIAFS SNNNSGSPST NAKRTKPSPV  240
VTTTLSSASS SISFDGRATS FVSADQQYEP DTEALAQVKE MIYRAAAMRP VTLGCDRDED  300
GAGERAPGRR NVRISSDPQT VAARQRRERI SERLRVLQRL VPGGAKMDTA SMLDEAASYL  360
RFLKAQIRDL QTLDRRNYNY PPPSNNAGAD HHLNNCTAAA PQLMGYDDNG VLPPFAAFTP  420
ATPPAAAETT TLGGGQEPPF MCGRFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323328RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G241100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566789.11e-173transcription factor APG
TrEMBLI1HNP81e-172I1HNP8_BRADI; Uncharacterized protein
STRINGBRADI2G41390.11e-173(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-32bHLH family protein