PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G240000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 381aa    MW: 42528.9 Da    PI: 5.7488
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G240000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.44.6e-33741662103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k+ye++ d++++ ++sw   g+sfvv+d++ +a  vLp++Fkh nfaSFvRQLn+YgF+kv++e+         weF+++ F +gkk+
  Brast01G240000.1.p  74 FVGKTYEMVADAATDAVVSWAGGGSSFVVWDPHALAAAVLPRFFKHANFASFVRQLNTYGFRKVNQER---------WEFANEDFLAGKKH 155
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r++ +
  Brast01G240000.1.p 156 LLKNIRRRRAS 166
                         *******9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.1E-5270163IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.71E-3170163IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-3470163IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-167497IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-2974163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-16112124IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340113137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-16125137IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MASSSRCALF VGSKRTRTSG GVGGAAVEEA MPCGSAVVKR EVKPEEQEQE EEREARAAWP  60
RPIEGLGEPG PAPFVGKTYE MVADAATDAV VSWAGGGSSF VVWDPHALAA AVLPRFFKHA  120
NFASFVRQLN TYGFRKVNQE RWEFANEDFL AGKKHLLKNI RRRRASKHQT KSQLRNGTSV  180
CYGQPESLGE VENLKRDHTA LRAEAVTLKQ QYSLCKSQLL AMEQRVLSNE RKQQQIITFF  240
VKSLSNPVFL QQIWLNYGNN KDLGSTVKRQ RLMENEEQRV VDALLKKGTE AAFEKAVSIS  300
AGSSDCGTVE NDEPMPRWTD QNIGDMCDDV WEELDAIPGI EMKQEGKADI PFDVEEFTGR  360
PCSWVDDCPY LVEPLHFVEH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-216616611123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G240000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231933.10.0heat stress transcription factor A-6a
SwissprotQ657C01e-159HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLI1HNR40.0I1HNR4_BRADI; Uncharacterized protein
STRINGBRADI2G41530.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-82heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]