PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G239700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 485aa    MW: 52785.9 Da    PI: 8.0063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G239700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-057999323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C++Cgk F r  nL+ H r H
  Brast01G239700.1.p 79 CEICGKGFQRDQNLQLHRRGH 99
                        *******************88 PP
2zf-C2H211.30.0011154176123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H + +
  Brast01G239700.1.p 154 WKCDKCSKKYAVQSDWKAHSKIC 176
                         58*****************9876 PP
3zf-C2H211.60.00083184202523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg++Fsr++++ +H   +
  Brast01G239700.1.p 184 DCGTVFSRRDSFITHRAFC 202
                         9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.36E-87699No hitNo description
Gene3DG3DSA:3.30.160.604.2E-57699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4897799IPR007087Zinc finger, C2H2
SMARTSM003550.0767799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM00355130119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-4142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.36E-8149174No hitNo description
SMARTSM00355150154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MFPHHLEQQQ QLRDQAESAD QDSSMSNLTT SAGANPPPPP PPSSGSNKRK RSLPGNPDPD  60
SEVVALSPAT LMATNRFLCE ICGKGFQRDQ NLQLHRRGHN LPWKLKQRGS KELVRKKVYI  120
CPEASCVHHD PSRALGDLTG IKKHFFRKHG EKKWKCDKCS KKYAVQSDWK AHSKICGTRE  180
YKCDCGTVFS RRDSFITHRA FCDALTEESA KAIGGLPVSM AQHHHHQHAM LFSPPQHQIT  240
HQDLAAFQEH HHAMQQQQQH CSYDVKPEMQ PWPTAATMPP YDDDDVHHQH ALLQPPLCNV  300
LATPQSSAAA PTQAQQHQQQ QPQQQMLPAA GGAHLSATAL LQKAAQMGAT IGGSAHYGTQ  360
MAGAATSGNG NGAFGLGISC LNNNNNQQQQ QMMSLAGRTP GGRGSEVDGE GMTRDFLGLR  420
AFSHRDILGL AGFDSSCMAA AANNNSSSSS AMAPACYEPP QQQHGLGQQQ QSSDEPWHGM  480
SSHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-34150211364Zinc finger protein JACKDAW
5b3h_F8e-34150211364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103116KLKQRGSKELVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G239700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3628550.0AK362855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010K06.
GenBankAK3753510.0AK375351.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3091O14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231936.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-115IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0Q3R4E50.0A0A0Q3R4E5_BRADI; Uncharacterized protein
STRINGBRADI2G41550.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-92indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]