PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G237800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 420aa    MW: 44718.2 Da    PI: 5.4287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G237800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-13228273555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h + Er+RR+++N++f++Lr+llP++      K +K ++L+kA  Y+k L+
  Brast01G237800.1.p 228 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLTKAAGYLKALE 273
                         7789*********************9.....699**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.415223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.26E-18225297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-13228276No hitNo description
Gene3DG3DSA:4.10.280.105.0E-17228292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10228273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDDVWCSLDI AGLQSALAAD PLWQPFPDSA VSSIGGDSNA YFGVADVDLM LSSPDEANNG  60
MATDMDAAGC FFGDDDDGGR FLFQHSSTSS SLSSKRSLSI DSGGSSGSFT LEASPYQAPA  120
PAMAHLPSFP GGDHDDEAIM RAMMAVMSAS ASPSSSASPS ASSRPPHPFR RDSSGSAHQG  180
QAAAAMPQKL GGGNGGHVVV KSSLAMSPPE KTQEEPRAAG GNSGQLYHMM SERKRREKLN  240
DSFHTLRSLL PPCSKKDKTT VLTKAAGYLK ALEAQVWELE EKNGKLERHI PACSQRQEAP  300
AGQQSRRAKV QISRSDEVVN LTVMVMVECD VVELVLRLLE CLRWMEQISV LSVDADTYSP  360
KVLLKAIASI KLRITDGCDW NEASFHEAMT KAVNDATSSP PTTTTSLRPW ARVPLVVTA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231236ERKRRE
2232237RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G237800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231939.10.0putative transcription factor bHLH041
TrEMBLI1HNT10.0I1HNT1_BRADI; Uncharacterized protein
STRINGBRADI2G41670.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-19bHLH family protein