PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G216200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 477aa    MW: 52280 Da    PI: 7.8636
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G216200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.46.7e-10103128227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C f++rt tC +G+ CkF H++
  Brast01G216200.1.p 103 GEKDCAFYMRTRTCMFGEDCKFDHPQ 128
                         7889********************97 PP
2zf-CCCH308.9e-10152178127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C+ff++t  C++ ++CkF+H++
  Brast01G216200.1.p 152 PGEPDCPFFMKTSRCRFASKCKFNHPK 178
                         5789*********************96 PP
3zf-CCCH23.59.6e-08207227425
                         ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                         e+C+ff + G Ck+G +CkF+H
  Brast01G216200.1.p 207 EPCPFFPK-GKCKFGTNCKFSH 227
                         89******.************* PP
4zf-CCCH32.61.4e-10280306127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C+f+ +tG C yG++C+F+H++
  Brast01G216200.1.p 280 PGEVDCSFYIKTGSCMYGSTCRFNHPE 306
                         57899********************96 PP
5zf-CCCH375.7e-12367391226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++  C+f+++tG+Ck+ ++CkF+H+
  Brast01G216200.1.p 367 GETVCDFYMKTGFCKFSEKCKFHHP 391
                         6789********************9 PP
6zf-CCCH42.79.6e-14421444427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         e C+f+++tGtCk+G +CkF H+p
  Brast01G216200.1.p 421 EVCSFYMKTGTCKFGVQCKFDHPP 444
                         78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0048101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.953101129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5102128IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7103128IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5151178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511151179IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6153178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-5156181IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011204229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.873204230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5205228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5207229IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-5207227IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5279306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192279307IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6283307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4285306IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-7365392IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-7365393IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371365393IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9367391IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5370391IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-7417444IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403417445IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6419445IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5421442IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-11421444IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MSDFPFYPYR GGGAGDDPAA SYSSYEVDLI AARYAGDRFP YPSASGAFDA HVGARRPSEV  60
LYHQSIMGSH STMGQSEALY SSNTMAKRPR VESSLPIYPQ RPGEKDCAFY MRTRTCMFGE  120
DCKFDHPQWV PEGGIPNWKE APKAEESYPE RPGEPDCPFF MKTSRCRFAS KCKFNHPKEK  180
VNATAAGTGN KGSLISESSI SPVKPSEPCP FFPKGKCKFG TNCKFSHAKD IEVPSSGNES  240
KSTATVEAAG HNSAANDSVS AKKLTPVAQE HNSKGMPIRP GEVDCSFYIK TGSCMYGSTC  300
RFNHPERHHP VLDFPLAAPL GQSILPTSSV VPVEMLNRAT NFLPNFDFHA THVPIEPEPI  360
AYPQRPGETV CDFYMKTGFC KFSEKCKFHH PVDRSAPDPV ATRQKSVTLT LAGLPRREDA  420
EVCSFYMKTG TCKFGVQCKF DHPPPQEAIA KVSKQGAAEE KGEKKEAVGL SYVLEN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G216200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569363.10.0zinc finger CCCH domain-containing protein 8 isoform X1
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0Q3ISB40.0A0A0Q3ISB4_BRADI; Uncharacterized protein
STRINGBRADI2G43600.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-141floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]