PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G210600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 309aa    MW: 33959.4 Da    PI: 5.9372
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G210600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.41.9e-32211122102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k+y+++ +++++ li+w +++nsfvv d   f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++
  Brast01G210600.1.p  21 FVAKTYQMVCEPRTDALIRWGRDNNSFVVADVAGFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTH 102
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll +i r+k+
  Brast01G210600.1.p 103 LLPRIVRRKK 112
                         *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.0E-5017110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.9E-3517110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.67E-3218110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-2821110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-162144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-165971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-167284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDGLHTELAL GLIGQLQTAP FVAKTYQMVC EPRTDALIRW GRDNNSFVVA DVAGFSQLLL  60
PCFFKHGNFS SFVRQLNTYG FRKVHPDRWE FAHESFLRGQ THLLPRIVRR KKRGEGASCS  120
SSAIDGHEAQ HVAAAITGEE LDLELDDDEE EALLLEEVQR LRREQAAIGE QLARMSRRLQ  180
ATERRPDQLM SFITRLAAEE CPDAAEKKRQ RMFPSRDSAA PPPSSPSPIA ALPPPRPPVI  240
DDGAWRRAEQ KPVRRSIATS EEQPAASPGA QQVPEFEGGG GGVGMGLTDG GAAVETPFPF  300
CLLGQCFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-21311011129Heat shock factor protein 1
5d5v_B2e-21311011129Heat shock factor protein 1
5d5v_D2e-21311011129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G210600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085531e-128KF208553.1 Triticum aestivum heat shock factor C1e (HsfC1e) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566902.11e-149heat stress transcription factor C-1a
RefseqXP_024314176.11e-149heat stress transcription factor C-1a
SwissprotQ6VBA41e-113HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLI1HPK71e-148I1HPK7_BRADI; Uncharacterized protein
STRINGBRADI2G44050.11e-149(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-51heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]