PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G205400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 249aa MW: 26951.2 Da PI: 9.2524 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 85.3 | 6.6e-27 | 59 | 110 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++++Y+eCl+NhAa++Ggh+vDGC+Efm++ + + l CaACgCHR+FHRr Brast01G205400.1.p 59 QQAQYHECLRNHAAATGGHVVDGCCEFMAA----SPDDPLACAACGCHRSFHRRGD 110 5789*************************9....4458***************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-17 | 60 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.0E-22 | 61 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.5E-21 | 62 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.921 | 63 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-27 | 163 | 233 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.66E-17 | 165 | 232 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.6E-24 | 176 | 232 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MLHFDNHHTT AQGLACALFS IRAMEFREED DDAGVPPAPA SAANRAAPAG MHALESRRQQ 60 AQYHECLRNH AAATGGHVVD GCCEFMAASP DDPLACAACG CHRSFHRRGD TSPGRARLQP 120 LLAAANTRAP LLLPPAPAGN SKQQRLAPFP YGLVAPSAGT TTTESSSEER RGAPRRRSRT 180 TFTREQKEQM LAFAERVGWR MQRQDEASVE QFCAEAGVRR QALKVWMHNN KQSGSSAGRR 240 QLQKPSGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-28 | 176 | 238 | 18 | 80 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G205400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232067.1 | 1e-99 | zinc-finger homeodomain protein 5 | ||||
Swissprot | A2WSZ6 | 1e-56 | ZHD5_ORYSI; Zinc-finger homeodomain protein 5 | ||||
TrEMBL | I1HPS0 | 3e-98 | I1HPS0_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G44540.1 | 4e-99 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 8e-34 | homeobox protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G205400.1.p |