PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G193000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 93aa MW: 10321.2 Da PI: 5.8698 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.7e-09 | 21 | 65 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+ +E +l+ +a + +G g +W +++r mg ++t+ +++ ++ Brast01G193000.1.p 21 EWSRQENKLFEEALAYYGEGtpdRWLKVSRAMGGTKTADEVRRHY 65 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 5.3E-7 | 18 | 71 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.48E-12 | 20 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.586 | 20 | 69 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.63E-5 | 21 | 65 | No hit | No description |
Pfam | PF00249 | 1.1E-7 | 21 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-4 | 21 | 67 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MSSSAGSRSS STRGGANAAS EWSRQENKLF EEALAYYGEG TPDRWLKVSR AMGGTKTADE 60 VRRHYEILED DFDLIRSGRL PFPQYNTQGA WN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-22 | 10 | 89 | 2 | 77 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G193000.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373937 | 3e-65 | AK373937.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3048G15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569502.1 | 7e-51 | protein RADIALIS-like 3 | ||||
Refseq | XP_024314815.1 | 7e-51 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 8e-23 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | I1HQ43 | 1e-49 | I1HQ43_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G45780.1 | 3e-50 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 3e-22 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Brast01G193000.1.p |