PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G185400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 589aa MW: 63317.2 Da PI: 8.4102

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G185400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	72.9	8.2e-23	13	143	5	126
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk...sgyWkatg 87 f hPtd el+++yLk+ v++ + + ++i+++d+y ++P+dL + +++ +++ wyfF++ + k+++g+rk+r++ +g W++ Brast01G185400.1.p 13 FSSHPTDLELIDNYLKPWVTTGERPW-KFIHDADVYAANPEDLSRtfspaMASDGQEAWYFFTPLRAKSRRGQRKSRTVGsgdDGCWHSER 102 5669*****************999.89**********844677555557779***************876455789* PP NAM 88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmhey 126 k+++s +++++g ++ + f ++ + + +++ W+m e Brast01G185400.1.p 103 AAKPLFSGivHSRQIGYRQAFSFTTKVDGRLVRSGWLMAEI 143 **9999999*******9999999*****997 PP
2	NAM	74.1	3.4e-23	310	436	7	126
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdk 90 hP+d++l++ yL +++++ ++++ ++ ++vd+y +eP L + +++ +ek wyfF++ + k +g+r+ r++ +g W++ + Brast01G185400.1.p 310 KHPSDQDLIKSYLIPRIASGEHPC-KFTHDVDVYAAEPAVLSgQfspaTASDGEKAWYFFTTLRAKRIRGQRRPRTVGsgQGCWHSESGVR 399 59*****************999.89**********84366755666889****************86634788**** PP NAM 91 evlskkgelvglkktLvfykgrapkge..ktdWvmhey 126 +v++ +++++g+++ + f k+++++g+ +t W+m e Brast01G185400.1.p 400 DVFD-GDRQIGCRQFFSFMKKDEESGKslRTGWIMVEI 436 .999*******99888887669***996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	31.786	9	163	IPR003441	NAC domain
Pfam	PF02365	6.9E-14	11	142	IPR003441	NAC domain
SuperFamily	SSF101941	2.75E-31	13	163	IPR003441	NAC domain
PROSITE profile	PS51005	29.427	304	458	IPR003441	NAC domain
Pfam	PF02365	1.1E-12	306	435	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-31	308	458	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence Send to blast
MAPIRRGAPR PDFSSHPTDL ELIDNYLKPW VTTGERPWKF IHDADVYAAN PEDLSRTFSP 60 AMASDGQEAW YFFTPLRAKS RRGQRKSRTV GSGDDGCWHS ERAAKPLFSG IVHSRQIGYR 120 QAFSFTTKVD GRLVRSGWLM AEIGLTPAGS SEEELVLCKV YRTPREAPPT GSTTAARRVG 180 PKIGRGKDGE CSASTEEKAS GAGPAKASVC SAQPPRASSS TDTAATESDS EQDSSSQAVI 240 DTSLSAAPLR AQIQRVIAGD AALTPCAEAC RPPQVPFLPS SPIRRTSAAP RVAAVPSGSS 300 APPPRPDFAK HPSDQDLIKS YLIPRIASGE HPCKFTHDVD VYAAEPAVLS GQFSPATASD 360 GEKAWYFFTT LRAKRIRGQR RPRTVGSGQG CWHSESGVRD VFDGDRQIGC RQFFSFMKKD 420 EESGKSLRTG WIMVEIGLNY GEHKGTSDEL VLYKVYRSPR AGPETDAQQS TAATESSGSK 480 RKASDENSGA ESPARGTKKS TALAASGRKK KTDDKNSGAA ACPPQLCTRC RIETAESHSG 540 TADEEDETRG GSETGLLEND SLTDESAAPR GHERGESSGS ARTFYRFV*

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence Send to blast

MAPIRRGAPR PDFSSHPTDL ELIDNYLKPW VTTGERPWKF IHDADVYAAN PEDLSRTFSP  60
AMASDGQEAW YFFTPLRAKS RRGQRKSRTV GSGDDGCWHS ERAAKPLFSG IVHSRQIGYR  120
QAFSFTTKVD GRLVRSGWLM AEIGLTPAGS SEEELVLCKV YRTPREAPPT GSTTAARRVG  180
PKIGRGKDGE CSASTEEKAS GAGPAKASVC SAQPPRASSS TDTAATESDS EQDSSSQAVI  240
DTSLSAAPLR AQIQRVIAGD AALTPCAEAC RPPQVPFLPS SPIRRTSAAP RVAAVPSGSS  300
APPPRPDFAK HPSDQDLIKS YLIPRIASGE HPCKFTHDVD VYAAEPAVLS GQFSPATASD  360
GEKAWYFFTT LRAKRIRGQR RPRTVGSGQG CWHSESGVRD VFDGDRQIGC RQFFSFMKKD  420
EESGKSLRTG WIMVEIGLNY GEHKGTSDEL VLYKVYRSPR AGPETDAQQS TAATESSGSK  480
RKASDENSGA ESPARGTKKS TALAASGRKK KTDDKNSGAA ACPPQLCTRC RIETAESHSG  540
TADEEDETRG GSETGLLEND SLTDESAAPR GHERGESSGS ARTFYRFV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-12	11	166	17	171	Stress-induced transcription factor NAC1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G185400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566991.2	0.0	uncharacterized protein LOC100830721
TrEMBL	A0A2K2DE77	0.0	A0A2K2DE77_BRADI; Uncharacterized protein
STRING	BRADI2G46430.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4011	29	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	1e-16	NAC domain containing protein 47

Link Out ? help Back to Top
Phytozome	Brast01G185400.1.p