PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G181200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 304aa    MW: 32856.1 Da    PI: 8.1698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G181200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.8e-141462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W +eEdell  +v+ +G   +W + +++ g++R++k+c++rw++yl
  Brast01G181200.1.p 14 RGPWAPEEDELLRSYVRSHGAVgNWIALPHKAGLNRCGKSCRLRWLNYL 62
                        89******************879************************97 PP
2Myb_DNA-binding34.35.6e-1171111446
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          T++Ed  +  + +  G++ W+ Ia++++ gRt++++k++w++
  Brast01G181200.1.p  71 YTEQEDMVICSLYNSIGSR-WSIIASKLP-GRTDNDVKNYWNT 111
                         69*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.03966IPR017930Myb domain
SuperFamilySSF466898.17E-2611109IPR009057Homeodomain-like
SMARTSM007173.1E-101364IPR001005SANT/Myb domain
PfamPF002493.6E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-231569IPR009057Homeodomain-like
CDDcd001671.15E-81662No hitNo description
SMARTSM007172.5E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129412.98867117IPR017930Myb domain
PfamPF002491.2E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2170116IPR009057Homeodomain-like
CDDcd001671.25E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWAPE EDELLRSYVR SHGAVGNWIA LPHKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDMVIC SLYNSIGSRW SIIASKLPGR TDNDVKNYWN TKLKKKAMGM  120
HHHHQQHYQQ HHQGRRGASA SAIATPPPAP QSQCAPSSMM HPSPASASSA VTTASAGDAC  180
SFMYSDAPAL PQYHNAEFSP PPVQPTQAAS GWASGMVAFE DMFLPELIGG GGGHEFPLLQ  240
GDLFAGYLGP LLQDNYRASA ASQLQLQELS ACYFPNAQAE MWAAADHVSK PPPPPAGLCP  300
RLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G181200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794311e-139HF679431.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB25 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567000.11e-169transcription factor MYB4
TrEMBLI1HQG51e-167I1HQG5_BRADI; Uncharacterized protein
STRINGBRADI2G46770.11e-168(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-66myb domain protein 36