PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G174200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 263aa    MW: 28482.9 Da    PI: 5.4324
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G174200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.3e-182875148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEdellv+ v++ G g+W+t +r+ g+ R++k+c++rw +yl
  Brast01G174200.1.p 28 RGPWTAEEDELLVRFVEREGEGRWRTLPRRAGLLRCGKSCRLRWMNYL 75
                        89******************************99************97 PP
2Myb_DNA-binding45.41.9e-1486126648
                         HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         ++E++l++++++ lG++ W++Ia +++ gRt++++k++w+++l
  Brast01G174200.1.p  86 EDEEDLILRLHRVLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 126
                         79***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0252375IPR017930Myb domain
SuperFamilySSF466891.39E-2926122IPR009057Homeodomain-like
SMARTSM007171.1E-132777IPR001005SANT/Myb domain
PfamPF002491.6E-152875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-222982IPR009057Homeodomain-like
CDDcd001674.21E-123075No hitNo description
PROSITE profilePS5129424.4576130IPR017930Myb domain
SMARTSM007171.9E-1380128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2483131IPR009057Homeodomain-like
PfamPF002495.6E-1386126IPR001005SANT/Myb domain
CDDcd001671.32E-1186126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MARRKPTAQR GARSAEGQSQ SETATLKRGP WTAEEDELLV RFVEREGEGR WRTLPRRAGL  60
LRCGKSCRLR WMNYLRPDIK REPIAEDEED LILRLHRVLG NRWSLIAGRL PGRTDNEIKN  120
YWNSHLSKKL IAQGLDPRTH MPLARADSKT APAVLGPVGP PPDPALPAQP TTAQSGAAGI  180
GPGDGGRASA ADRGGDEDLA ATMSLDDAVA QPMGFEGFAD QFFAEHHAAS GGFDDLGCAM  240
VDADDAFALF LDSLVNESQF VD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28261305108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G174200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3765621e-144AK376562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3127N16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567025.11e-164transcription repressor MYB5
SwissprotQ388502e-71MYB5_ARATH; Transcription repressor MYB5
TrEMBLI1HQN41e-163I1HQN4_BRADI; Uncharacterized protein
STRINGBRADI2G47367.11e-163(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.19e-71myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]