PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G169200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 390aa    MW: 40267.6 Da    PI: 7.1895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G169200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32e-06276316954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  Brast01G169200.1.p 276 ARLRRERVSDRLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 316
                         599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.411267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-12273324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-10273321No hitNo description
Gene3DG3DSA:4.10.280.101.7E-9276324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDIFGSWAGA GHQQHEDVYL QPRPAAGGHL MSSSCGRFDM DDDAFFGQCV DGVLGTGDAG  60
GGTTACGYGV AAGDPMGFLS SDGAGAHDGL LDAALAFSRV LACGGDPGAG VSNGAMFSSG  120
GHSGTTTVCN ISSGDSNNTY SGGGHDNNNE VASPTSTVLS PTSLLPNSKT PCPKRKLPDV  180
GYPATTLVTP PQAPAPLLPR PAGAKRRALA ATTSINFGHD TNSNACGYEP DVEAMAQVKE  240
MIYRAAAMRP VSLVTAEAKP RRKNVRISSD PQTVAARLRR ERVSDRLRVL QKLVPGGSKM  300
DTASMLDEAA SYLKFLRSQV QALEILGPNT STTTNSSNAM ATGTGRLHRQ SYYSSGNDNN  360
SGFLGFARNN NISAFGNPNN GNATNDSLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258263KPRRKN
2276281RLRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G169200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554553e-93AK355455.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567042.10.0uncharacterized protein LOC100822019
RefseqXP_024315232.10.0uncharacterized protein LOC100822019
SwissprotA0A0P0WQ907e-46LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLI1HQU00.0I1HQU0_BRADI; Uncharacterized protein
STRINGBRADI2G47810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-35bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]