PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G162100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 488aa MW: 56672.7 Da PI: 8.6351

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G162100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.9	1.9e-19	56	168	2	91
FAR1 2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk......................tekerrtraetrtgCkaklkv 68 fYn+YA+ vGFs +k+ +++s +it+ t++C++ gk ++k+ +k+r++++ + t+C+ak++v Brast01G162100.1.p 56 FYNRYASIVGFSAKKAGNYHSrgAFVSKITRCTYRCNRVGKIVDNKTVeerreareqnriqktgltcpvqGKKTRNKNVIEITDCRAKMVV 146 9******************5556789*********98887778899************998999999********** PP FAR1 69 kkekdgkwevtkleleHnHelap 91 +++ ++kw+vt+++ eHnH+l+p Brast01G162100.1.p 147 TLK-EDKWVVTSFDMEHNHALNP 168 .9**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-17	56	168	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-32	288	382	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MFMITGWDGR DNTIHGAENE EDTQQEGGTQ KNQEIRTQHV PHLDKVFMAD TEAFAFYNRY 60 ASIVGFSAKK AGNYHSRGAF VSKITRCTYR CNRVGKIVDN KTVEERREAR EQNRIQKTGL 120 TCPVQGKKTR NKNVIEITDC RAKMVVTLKE DKWVVTSFDM EHNHALNPPG ESKYLRSHKH 180 ITEEEKLLIR TLHSVKMPSR KIMVVLAVMR GGLSAVPFTK KDVSNYRTSI RQENNQNDMM 240 MVIDYFRKRQ MEDPSFYYAF KVDCENKVQN IFWSDGNSRR FYELYGDCVS FDTTYKTNMY 300 NLPFAPFVGI TGHAHNCLFA CAILQNETTD TFTWLFEEFL LYMGGKMPIT IITDQDVAMK 360 QAIPMVFHSS KHRNCLFHIK KKAEEKAARC FATNPTLHIE FNDIINRSQT EDEFETLWPA 420 MIQKYKVDKR EVKAHIFKDN VGSIYSIISF LGEYQRISEN IMEKQKEHDS MTRTTRPTLW 480 AGSELEL*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MFMITGWDGR DNTIHGAENE EDTQQEGGTQ KNQEIRTQHV PHLDKVFMAD TEAFAFYNRY  60
ASIVGFSAKK AGNYHSRGAF VSKITRCTYR CNRVGKIVDN KTVEERREAR EQNRIQKTGL  120
TCPVQGKKTR NKNVIEITDC RAKMVVTLKE DKWVVTSFDM EHNHALNPPG ESKYLRSHKH  180
ITEEEKLLIR TLHSVKMPSR KIMVVLAVMR GGLSAVPFTK KDVSNYRTSI RQENNQNDMM  240
MVIDYFRKRQ MEDPSFYYAF KVDCENKVQN IFWSDGNSRR FYELYGDCVS FDTTYKTNMY  300
NLPFAPFVGI TGHAHNCLFA CAILQNETTD TFTWLFEEFL LYMGGKMPIT IITDQDVAMK  360
QAIPMVFHSS KHRNCLFHIK KKAEEKAARC FATNPTLHIE FNDIINRSQT EDEFETLWPA  420
MIQKYKVDKR EVKAHIFKDN VGSIYSIISF LGEYQRISEN IMEKQKEHDS MTRTTRPTLW  480
AGSELEL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	132	KKTRNKN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G162100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014757844.2	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024318808.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024318809.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0Q3L679	0.0	A0A0Q3L679_BRADI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-74	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Brast01G162100.1.p