PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast01G159900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | B3 | ||||||||
Protein Properties | Length: 397aa MW: 43882.4 Da PI: 10.4285 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.2 | 5e-21 | 31 | 131 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 fkvl + ++rl +p +f++++ ++k+++s+ tle +sgr+W v + r++ +++++++GW +Fvk++ L+e Df+vF Brast01G159900.1.p 31 FKVL--IGDF-QKRLKIPPNFCKHIpweasrkakkSLKEASSMAATLEGPSGRTWPVVI--RRTAEGTFFASGWTKFVKDQALRELDFLVF 116 5555..3344.457********888*******99999999*******************..****************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++dg +f +vf+k Brast01G159900.1.p 117 RHDGGARF--AAMVFDK 131 *8876555..7777776 PP | |||||||
2 | B3 | 52.2 | 1.1e-16 | 296 | 382 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++ +v s ++++p f ++h ++e ++ l+d+ g+ W v +i ++++r l++GW F++ n L+egD +vF+l+g ef +v+ Brast01G159900.1.p 296 MSTMHVYYSFMMRFPTGFSRQHL--PRERAEMALRDPGGKAWAVLYI-PNTRDR--LSRGWCAFARGNCLEEGDCCVFELVGAAEF--RVH 379 6788999999*********9995..345569***************4.444455..9***********************997777..999 PP EE- CS B3 96 vfr 98 +fr Brast01G159900.1.p 380 IFR 382 998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 25 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-20 | 26 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.788 | 27 | 132 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.37E-19 | 28 | 130 | No hit | No description |
SMART | SM01019 | 2.6E-12 | 30 | 132 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-18 | 30 | 131 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-22 | 284 | 382 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-23 | 285 | 382 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.40E-24 | 290 | 382 | No hit | No description |
PROSITE profile | PS50863 | 13.789 | 292 | 384 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-10 | 292 | 384 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-15 | 294 | 382 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MRARVLLIEG SMPAAEGQSP WATGERRPHF FKVLIGDFQK RLKIPPNFCK HIPWEASRKA 60 KKSLKEASSM AATLEGPSGR TWPVVIRRTA EGTFFASGWT KFVKDQALRE LDFLVFRHDG 120 GARFAAMVFD KTACEREDLL RLGEDGPRKK RGRPRKASSR DGTVGKELVP YRGAGAPSDP 180 QPQVACSSST VELGSAGQSI AALKTEADTD ELPVIPSNPG PSQKRHGPDA EDGCPAKTRS 240 IQDDLAVAVA AGIPPSVRRY NGYVSRRRPV TGAERQRAME IAHSFRSSLP HCVIRMSTMH 300 VYYSFMMRFP TGFSRQHLPR ERAEMALRDP GGKAWAVLYI PNTRDRLSRG WCAFARGNCL 360 EEGDCCVFEL VGAAEFRVHI FRVVEPPVPA VRIRIA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast01G159900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 3e-99 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014754273.1 | 0.0 | B3 domain-containing protein Os01g0723500 | ||||
Swissprot | Q8S2E6 | 0.0 | Y1235_ORYSJ; B3 domain-containing protein Os01g0723500 | ||||
TrEMBL | A0A0Q3GE44 | 0.0 | A0A0Q3GE44_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G48580.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12792 | 31 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-25 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast01G159900.1.p |