PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G159700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 726aa    MW: 82980.4 Da    PI: 7.6591
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G159700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.72.1e-18191101199
                         HHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3  11 lksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         ++ +rl +p++f+ ++        + + ++s +++l++++g++W v+l  +k ++r+++t+GW++Fv++n L+e +f++F++d  ++ +++
  Brast01G159700.1.p  19 FA-RRLEIPRDFLCHIpdvgvrhsDTPVASSAQVILKHSKGKTWPVEL--EKVDRRVFMTTGWSRFVEDNSLREYEFLLFRYD--MDLHFM 104
                         44.46999****97779999988766667999****************..*******************************96..566669 PP

                         EEEE-S CS
                  B3  94 vkvfrk 99 
                         v+vf +
  Brast01G159700.1.p 105 VSVFGR 110
                         999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.7E-218113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-208113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.5928111IPR003340B3 DNA binding domain
CDDcd100171.09E-169108No hitNo description
SMARTSM010191.1E-1511111IPR003340B3 DNA binding domain
PfamPF023621.1E-1518110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MEEEGKGRHR FFKVLVGDFA RRLEIPRDFL CHIPDVGVRH SDTPVASSAQ VILKHSKGKT  60
WPVELEKVDR RVFMTTGWSR FVEDNSLREY EFLLFRYDMD LHFMVSVFGR NACEKAIQYS  120
GSGAQATGNL EAKLRSDICP SNRRGHGADK LTEIANNLMH SHSLVNIPDH FDTEGFAGLH  180
LHEVGGSKDE LRTCLLLKGP MEDDKAKTMT EVMRRLRLDK VTIDLFCAIL CLYKWNVDAA  240
AKDFDICRGK TQTQSQFLKK KLVLQFDFIK IQLQRFFPLE DDCSTQICDS RNSSLDEPNF  300
LNEPLQCDQS SVKRKLVDEH VLCDLSCKQK RRIGKSRTQQ TSETPRRSAR LACLNISHDS  360
IESLLKERPE VLESSATSKI DRVEDRAGQA RLLKKKPDSV LQGNCKNMIG SFPQDFKRFK  420
SARGETALSE EPAHSEETFE EQIDRNALET SASLIRTGVI ESSPPTNSKV SAPLKMNELY  480
LTWKPSLCAN PIEKILLDIQ RDNFLKTISH VQEIVRSHPS DLLCADVIET VVKKEILKWD  540
SCLEDMDAKR IVIAFLEHAK KIKVIHNFNM KIRKEEFSAK LQDQFKWQLN ELESGYTSLE  600
LDYKKATSDS NIAVSALEEL KRKMHALQDE IKEMQQSLMM KEDEMQKLVR QVAEHESLVQ  660
KSLMERVRVK AVLKSYERIL VGLKDRLASA ELGVIDVEAL VKVEMENMSK EIEISKGSLL  720
RINFK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G159700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232255.10.0B3 domain-containing protein Os03g0120900 isoform X1
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0Q3JB800.0A0A0Q3JB80_BRADI; Uncharacterized protein
STRINGBRADI2G48597.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.14e-13B3 family protein